Construction of a new porcine whole-genome framework map using a radiation hybrid panel.
We have constructed a radiation hybrid (RH) map of the porcine genome using an RH panel generated by an irradiation dose of 5000-rad (Sus scrofa radiation hybrid map, SSRH map). Normal porcine aortic endothelial cells were irradiated and fused with a thymidine kinase-deficient mouse cell line, L-M (TK-). A total of 110 cell lines were selected and used for further analysis. Among 1091 microsatellite (MS) markers selected for mapping, 842 markers (77%) could be typed on the panel. The framework map comprised 342 MS markers and an additional 247 MS markers were then added to generate the whole-genome map. The average retention frequency for the data set was 30.6%. The total map length was 5596.2 centiRay (cR). Using an estimated physical length of 2718 Mbp, the average ratio between cR and physical distance over the porcine genome was estimated to be 0.49 Mb/cR.
Hamasima
N
N
Animal Genome Research Program Team (AGP), STAFF-Institute, Tsukuba, Ibaraki 305-0854, Japan. hamasima@affrc.go.jp
Suzuki
H
H
Mikawa
A
A
Morozumi
T
T
Plastow
G
G
Mitsuhashi
T
T
D000818:Animals; D016678:Genome; D018895:Microsatellite Repeats; D021101:Radiation Hybrid Mapping; D034421:Sus scrofa / Q000235:genetics*