title: Plasma RNA quantification and HIV-1 divergent strains.
abstract: The diversity of HIV complicates viral load measurement for patient management and treatment monitoring. Numerous studies have shown that non-B group M variants can be underestimated and that group O strains are not detected by commercial tests. More recent versions of the kits used for previous studies have improved the quantification of non-B variants but are still unable to detect or correctly quantify group O strains. In this study, the authors evaluated the new Abbott LCx HIV RNA Quantitative viral load kit with a large collection of samples from Europe and central Africa. One hundred thirty-three group M samples, including 69 from patients infected with non-B variants, and 70 group O samples were tested. The LCx system was compared with the Cobas Amplicor HIV-1 Monitor v1.5 test and with a quantitative real-time polymerase chain reaction method based on LightCycler technology. The LCx and Cobas tests had similar quantification ranges for group M samples and a high degree of linearity (r2 = 0.9582). The LCx method quantified group O variants (31 of the 48 patients were quantifiable) and gave values within the range of those obtained with the LightCycler assay. The two assays were sensitive but showed only moderate linearity (r2 = 0.6195), probably because of higher diversity of group O strains and the use of primers and probes in different regions. In conclusion, the authors showed that the LCx kit allowed quantification of the large group M diversity and group O variants.
authors.affiliation: Laboratoire de Virologie, GRAM IFR 23 CHU Charles Nicolle, Rouen, France. Jean_Christophe.Plantier@chu-rouen.fr
authors.forename: Jean-Christophe
authors.initials: JC
authors.lastname: Plantier
authors.forename: Marie
authors.initials: M
authors.lastname: Gueudin
authors.forename: Florence
authors.initials: F
authors.lastname: Damond
authors.forename: Joséphine
authors.initials: J
authors.lastname: Braun
authors.forename: Philippe
authors.initials: P
authors.lastname: Mauclère
authors.forename: François
authors.initials: F
authors.lastname: Simon
mesh_terms: D002163:Cameroon; D005602:France; D014644:Genetic Variation; D015658:HIV Infections / Q000821:virology*; D015497:HIV-1 / Q000145:classification* / Q000235:genetics* / Q000302:isolation & purification; D006801:Humans; D012367:RNA, Viral / Q000097:blood*; D011933:Reagent Kits, Diagnostic; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity; D019562:Viral Load
chemical_list: D012367:RNA, Viral; D011933:Reagent Kits, Diagnostic