EUGENE'HOM: A generic similarity-based gene finder using multiple homologous sequences.
EUGENE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGENE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGENE'HOM to handle sequences from a variety of organisms. The current target of EUGENE'HOM is plant sequences. The EUGENE'HOM web site is available at http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl.
Foissac
Sylvain
S
Laboratoire de Biométrie et Intelligence Artificielle, INRA, 31326, Castanet Tolosan Cedex, France. foissac@toulouse.inra.fr
Bardou
Philippe
P
Moisan
Annick
A
Cros
Marie-Josée
MJ
Schiex
Thomas
T
D000465:Algorithms; D018387:Codon, Initiator; D003196:Computer Graphics; D018076:DNA, Complementary / Q000737:chemistry; D018744:DNA, Plant / Q000032:analysis; D005057:Eukaryotic Cells; D005796:Genes; D016678:Genome; D020407:Internet; D022821:RNA Splice Sites; D017422:Sequence Analysis, DNA / Q000379:methods*; D012689:Sequence Homology, Nucleic Acid; D012984:Software; D014584:User-Computer Interface
D018387:Codon, Initiator; D018076:DNA, Complementary; D018744:DNA, Plant; D022821:RNA Splice Sites