title: RNA-related tools on the Bielefeld Bioinformatics Server.
abstract: We present four tools for the analysis of RNA secondary structure. They provide animated visualization of multiple structures, prediction of potential conformational switching, structure comparison (including local structure alignment) and prediction of structures potentially containing a certain kind of pseudoknots. All are available via the Bielefeld University Bioinformatics Server (http://bibiserv.techfak.uni-bielefeld.de).
authors.affiliation: Technische Fakultät, Universität Bielefeld, Postfach 10 01 31, D-33501 Bielefeld. Zentrum für Bioinformatik, Universität Hamburg, Bundesstrasse 43, D-20146 Hamburg, Germany.
authors.forename: Alexander
authors.initials: A
authors.lastname: Sczyrba
authors.forename: Jan
authors.initials: J
authors.lastname: Krüger
authors.forename: Henning
authors.initials: H
authors.lastname: Mersch
authors.forename: Stefan
authors.initials: S
authors.lastname: Kurtz
authors.forename: Robert
authors.initials: R
authors.lastname: Giegerich
mesh_terms: D001483:Base Sequence; D019295:Computational Biology; D003196:Computer Graphics; D020407:Internet; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry*; D012984:Software
chemical_list: D012313:RNA