Statistical analysis of functional regions in Ti and Ri sequenced plasmids in Agrobacterium.
The purpose of this paper is to examine functional regions of the completely sequenced DNA data of Ti and Ri plasmids, based on codon usage similarity. It is shown that a successful classification of functional regions is obtained by using statistical measures of codon usage dissimilarity and correspondence analysis.
Yoshida
K
K
Department of Biological Science, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
Futagami
K
K
Fujikoshi
Y
Y
D001426:Bacterial Proteins / Q000235:genetics; D001483:Base Sequence; D016009:Chi-Square Distribution; D003062:Codon; D004269:DNA, Bacterial / Q000032:analysis; D003627:Data Interpretation, Statistical; D005798:Genes, Bacterial; D036741:Plant Tumor-Inducing Plasmids / Q000235:genetics*; D010957:Plasmids / Q000235:genetics*; D012231:Rhizobium / Q000235:genetics*; D037521:Virulence Factors
D001426:Bacterial Proteins; D003062:Codon; D004269:DNA, Bacterial; D037521:Virulence Factors