GenePublisher: Automated analysis of DNA microarray data.
GenePublisher, a system for automatic analysis of data from DNA microarray experiments, has been implemented with a web interface at http://www.cbs.dtu.dk/services/GenePublisher. Raw data are uploaded to the server together with a specification of the data. The server performs normalization, statistical analysis and visualization of the data. The results are run against databases of signal transduction pathways, metabolic pathways and promoter sequences in order to extract more information. The results of the entire analysis are summarized in report form and returned to the user.
Knudsen
Steen
S
Center for Biological Sequence Analysis, BioCentrum-DTU, 2800 Lyngby, Denmark. steen@cbs.dtu.dk
Workman
Christopher
C
Sicheritz-Ponten
Thomas
T
Friis
Carsten
C
D001331:Automation; D016000:Cluster Analysis; D030541:Databases, Genetic; D020869:Gene Expression Profiling / Q000379:methods*; D020407:Internet; D008660:Metabolism; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D011401:Promoter Regions, Genetic; D012045:Regulatory Sequences, Nucleic Acid; D015398:Signal Transduction; D012984:Software