Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN.
In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of MALGEN, a tool to visualize sequence correspondences among long DNA sequences. The web tools and associated documentation can be accessed at http://www.lsi.upc.es/~alggen (RESEARCH link).
Farré
Domènec
D
Computing Unit, Institut de Recerca Oncològica, L'Hospitalet, Spain.
Roset
Romà
R
Huerta
Mario
M
Adsuara
José E
JE
Roselló
Llorenç
L
Albà
M Mar
MM
Messeguer
Xavier
X
D000818:Animals; D001665:Binding Sites; D003196:Computer Graphics; D017124:Conserved Sequence; D016678:Genome; D006801:Humans; D020407:Internet; D012045:Regulatory Sequences, Nucleic Acid; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D014157:Transcription Factors
D014157:Transcription Factors