title: Electrostatic properties in the catalytic site of papain: A possible regulatory mechanism for the reactivity of the ion pair.
abstract: We present an analysis of the electrostatic properties in the catalytic site of papain (EC 3.4.22.2), an archetype enzyme of the C1 cysteine proteinase family, and we investigate their possible role in the formation, stabilization and regulation of the Cys25((-))...His159((+)) catalytic ion pair. The electrostatic properties were computed using a reassociation method based in multicentered multipolar expansions obtained from ab initio quantum calculations of overlapping protein fragments. Solvent effects were introduced by coupling the use of multicentered multipolar expansions to two continuum boundary element methods to solve the Poisson and the linearized Poisson-Boltzmann equations. The electrostatic profile found in the proton transfer region of papain showed that this enzyme has a well-defined electrostatic environment to favor the formation and stabilization of the catalytic ion pair. The papain catalytic site electrostatic profile can be considered as an electrostatic fingerprint of the papain family with the following characteristics: (i) the presence of a net electric field highly aligned in the (Cys25)-SG-->(His159)-ND1 direction; (ii) the electrostatic profile has a saddle-point character; (iii) it is basically a local environmental effect. Furthermore, our analysis describes a possible regulatory mechanism (the E(SG-->ND1) attenuation effect) controlling the ion pair reactivity and permits to infer the Asp57 acidic residue as the most probable candidate to act as the electrostatic modulator.
authors.affiliation: Instituto de Biofísica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro-UFRJ, CCS, Bloco G, Ilha do Fundão, 21949-900 Rio de Janeiro, RJ, Brazil.
authors.forename: Laurent E
authors.initials: LE
authors.lastname: Dardenne
authors.forename: Araken S
authors.initials: AS
authors.lastname: Werneck
authors.forename: Marçal
authors.initials: M
authors.lastname: de Oliveira Neto
authors.forename: Paulo M
authors.initials: PM
authors.lastname: Bisch
mesh_terms: D000596:Amino Acids / Q000737:chemistry; D001665:Binding Sites; D020134:Catalytic Domain; D003545:Cysteine / Q000737:chemistry; D006639:Histidine / Q000737:chemistry; D017136:Ion Transport; D007477:Ions / Q000737:chemistry; D008024:Ligands; D008956:Models, Chemical; D009994:Osmolar Concentration; D010206:Papain / Q000737:chemistry* / Q000378:metabolism; D011522:Protons; D012997:Solvents / Q000737:chemistry; D055672:Static Electricity; D014867:Water / Q000737:chemistry
chemical_list: D000596:Amino Acids; D007477:Ions; D008024:Ligands; D011522:Protons; D012997:Solvents; D014867:Water; D006639:Histidine; D010206:Papain; D003545:Cysteine