title: Conformational changes detected in a sensory rhodopsin II-transducer complex.
abstract: Sensory rhodopsins (SRs) are light receptors that belong to the growing family of microbial rhodopsins. SRs have now been found in all three major domains of life including archaea, bacteria, and eukaryotes. One of the most extensively studied sensory rhodopsins is SRII, which controls a blue light avoidance motility response in the halophilic archaeon Natronobacterium pharaonis. This seven-helix integral membrane protein forms a tight intermolecular complex with its cognate transducer protein, HtrII. In this work, the structural changes occurring in a fusion complex consisting of SRII and the two transmembrane helices (TM1 and TM2) of HtrII were investigated by time-resolved Fourier transform infrared difference spectroscopy. Although most of the structural changes observed in SRII are conserved in the fusion complex, several distinct changes are found. A reduction in the intensity of a prominent amide I band observed for SRII indicates that its structural changes are altered in the fusion complex, possibly because of the close interaction of TM2 with the F helix, which interferes with the F helix outward tilt. Deprotonation of at least one Asp/Glu residue is detected in the transducer-free receptor with a pKa near 7 that is abolished or altered in the fusion complex. Changes are also detected in spectral regions characteristic of Asn and Tyr vibrations. At high hydration levels, transducer-fusion interactions lead to a stabilization of an M-like intermediate that most likely corresponds to an active signaling form of the transducer. These findings are discussed in the context of a recently elucidated x-ray structure of the fusion complex.
authors.affiliation: Department of Physics and Molecular Biophysics Laboratory, Boston University, Boston, Massachusetts 02215, USA.
authors.forename: Vladislav
authors.initials: V
authors.lastname: Bergo
authors.forename: Elena N
authors.initials: EN
authors.lastname: Spudich
authors.forename: John L
authors.initials: JL
authors.lastname: Spudich
authors.forename: Kenneth J
authors.initials: KJ
authors.lastname: Rothschild
mesh_terms: D001105:Archaea / Q000378:metabolism / Q000502:physiology; D019843:Archaeal Proteins / Q000737:chemistry* / Q000502:physiology; D001216:Asparagine / Q000737:chemistry; D002338:Carotenoids / Q000737:chemistry* / Q000502:physiology; D017666:Deuterium Oxide / Q000737:chemistry; D025602:Halorhodopsins; D006863:Hydrogen-Ion Concentration; D008958:Models, Molecular; D019633:Natronobacterium / Q000378:metabolism; D010957:Plasmids / Q000378:metabolism; D011485:Protein Binding; D011487:Protein Conformation; D011510:Proteolipids / Q000737:chemistry; D011993:Recombinant Fusion Proteins / Q000378:metabolism; D012243:Rhodopsin / Q000737:chemistry*; D025603:Sensory Rhodopsins; D015398:Signal Transduction; D017550:Spectroscopy, Fourier Transform Infrared; D014443:Tyrosine / Q000737:chemistry; D014867:Water / Q000737:chemistry; D014965:X-Rays
chemical_list: D019843:Archaeal Proteins; D025602:Halorhodopsins; D011510:Proteolipids; D011993:Recombinant Fusion Proteins; D025603:Sensory Rhodopsins; C020485:proteoliposomes; C061508:sensory rhodopsin II protein, archaeal; D014867:Water; D002338:Carotenoids; D014443:Tyrosine; D001216:Asparagine; D012243:Rhodopsin; D017666:Deuterium Oxide