title: Multiple cross mapping (MCM) markedly improves the localization of a QTL for ethanol-induced activation.
abstract: This study examines the use of multiple cross mapping (MCM) to reduce the interval for an ethanol response QTL on mouse chromosome 1. The phenotype is the acute locomotor response to a 1.5-g/kg i.p. dose of ethanol. The MCM panel consisted of the six unique intercrosses that can be obtained from the C57BL/6J (B6), DBA/2J (D2), BALB/cJ (C) and LP/J (LP) inbred mouse strains (N > or = 600/cross). Ethanol response QTL were detected only with the B6xD2 and B6xC intercrosses. For both crosses, the D2 and C alleles were dominant and decreased ethanol response. The QTL information was used to develop an algorithm for sorting and editing the chromosome 1 Mit microsatellite marker set (http://www.jax.org). This process yielded a cluster of markers between 82 and 85cM (MGI). Evidence that the QTL was localized in or near this interval was obtained by the analysis of a sample (n = 550) of advanced cross heterogenous stock animals. In addition, it was observed that one of the BXD recombinant inbred strains (BXD-32) had a recombination in the interval of interest which produced the expected change in behavior. Overall, the data obtained suggest that the information available within existing genetic maps coupled with MCM data can be used to reduce the QTL interval. In addition, the MCM data set can be used to interrogate gene expression data to estimate which polymorphisms within the interval of interest are relevant to the QTL.
authors.affiliation: Department of Behavioral Neuroscience, Oregon Health and Science University, Portland, OR 97201-3098, USA. hitzeman@ohsu.edu
authors.forename: R
authors.initials: R
authors.lastname: Hitzemann
authors.forename: B
authors.initials: B
authors.lastname: Malmanger
authors.forename: S
authors.initials: S
authors.lastname: Cooper
authors.forename: S
authors.initials: S
authors.lastname: Coulombe
authors.forename: C
authors.initials: C
authors.lastname: Reed
authors.forename: K
authors.initials: K
authors.lastname: Demarest
authors.forename: J
authors.initials: J
authors.lastname: Koyner
authors.forename: L
authors.initials: L
authors.lastname: Cipp
authors.forename: J
authors.initials: J
authors.lastname: Flint
authors.forename: C
authors.initials: C
authors.lastname: Talbot
authors.forename: B
authors.initials: B
authors.lastname: Rademacher
authors.forename: K
authors.initials: K
authors.lastname: Buck
authors.forename: J
authors.initials: J
authors.lastname: McCaughran
mesh_terms: D000818:Animals; D002874:Chromosome Mapping; D003433:Crosses, Genetic; D000431:Ethanol / Q000494:pharmacology*; D005819:Genetic Markers; D005838:Genotype; D051379:Mice; D008807:Mice, Inbred BALB C; D008810:Mice, Inbred C57BL; D008811:Mice, Inbred DBA; D008815:Mice, Inbred Strains; D018895:Microsatellite Repeats; D009043:Motor Activity / Q000187:drug effects / Q000235:genetics*; D011110:Polymorphism, Genetic; D040641:Quantitative Trait Loci
chemical_list: D005819:Genetic Markers; D000431:Ethanol