GABI-Kat SimpleSearch: a flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana.
CONCLUSIONS
GABI-Kat SimpleSearch is a database of flanking sequence tags (FSTs) of T-DNA mutagenized Arabidopsis thaliana lines that were generated by the GABI-Kat project. Sequences flanking the T-DNA insertion sites were aligned to the A.thaliana genome sequence, annotated with information about the FST, the insertion site and the line from which the FST was derived. A web interface permits text-based as well as sequence-based searches for relevant insertions. GABI-Kat SimpleSearch aims to help biologists to quickly find T-DNA insertion mutants for their research.


BACKGROUND
http://www.mpiz-koeln.mpg.de/GABI-Kat/
Li
Yong
Y
Max Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10, D-50829 Koeln, Germany.
Rosso
Mario G
MG
Strizhov
Nicolai
N
Viehoever
Prisca
P
Weisshaar
Bernd
B
D017360:Arabidopsis / Q000235:genetics*; D004251:DNA Transposable Elements / Q000235:genetics*; D004269:DNA, Bacterial / Q000235:genetics*; D003628:Database Management Systems; D030561:Databases, Nucleic Acid; D020224:Expressed Sequence Tags; D020869:Gene Expression Profiling / Q000379:methods; D016247:Information Storage and Retrieval / Q000379:methods*; D020407:Internet; D016254:Mutagenesis, Insertional / Q000379:methods*; D030821:Plants, Genetically Modified / Q000235:genetics; D017422:Sequence Analysis, DNA / Q000379:methods; D020079:Terminal Repeat Sequences / Q000235:genetics; D014584:User-Computer Interface
D004251:DNA Transposable Elements; D004269:DNA, Bacterial; C036483:T-DNA