title: Chemical discovery and global gene expression analysis in zebrafish.
abstract: The zebrafish (Danio rerio) provides an excellent model for studying vertebrate development and human disease because of its ex utero, optically transparent embryogenesis and amenability to in vivo manipulation. The rapid embryonic developmental cycle, large clutch sizes and ease of maintenance at large numbers also add to the appeal of this species. Considerable genomic data has recently become publicly available that is aiding the construction of zebrafish microarrays, thus permitting global gene expression analysis. The zebrafish is also suitable for chemical genomics, in part as a result of the permeability of its embryos to small molecules and consequent avoidance of external confounding maternal effects. Finally, there is increasing characterization and analysis of zebrafish models of human disease. Thus, the zebrafish offers a high-quality, high-throughput bioassay tool for determining the biological effect of small molecules as well as for dissecting biological pathways.
authors.affiliation: Molecular Genetics and Development Group, School of Biological Sciences, University of Auckland, Private Bag 92019, Auckland, New Zealand.
authors.forename: Franz B
authors.initials: FB
authors.lastname: Pichler
authors.forename: Sophie
authors.initials: S
authors.lastname: Laurenson
authors.forename: Liam C
authors.initials: LC
authors.lastname: Williams
authors.forename: Andrew
authors.initials: A
authors.lastname: Dodd
authors.forename: Brent R
authors.initials: BR
authors.lastname: Copp
authors.forename: Donald R
authors.initials: DR
authors.lastname: Love
mesh_terms: D000818:Animals; D001681:Biological Assay / Q000379:methods*; D004195:Disease Models, Animal; D015195:Drug Design; D005786:Gene Expression Regulation / Q000502:physiology*; D018507:Gene Expression Regulation, Developmental / Q000502:physiology; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D004364:Pharmaceutical Preparations / Q000378:metabolism*; D015027:Zebrafish / Q000196:embryology / Q000378:metabolism*
chemical_list: D004364:Pharmaceutical Preparations