ESTWeb: bioinformatics services for EST sequencing projects.
ESTWeb is an internet based software package designed for uniform data processing and storage for large-scale EST sequencing projects. The package provides for: (a) reception of sequencing chromatograms; (b) sequence processing such as base-calling, vector screening, comparison with public databases; (c) storage of data and analysis in a relational database, (d) generation of a graphical report of individual sequence quality; and (e) issuing of reports with statistics of productivity and redundancy. The software facilitates real-time monitoring and evaluation of EST sequence acquisition progress along an EST sequencing project.
Paquola
Apuã C M
AC
Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, 05508-900, São Paulo, SP, Brazil.
Nishyiama
Milton Y
MY
Reis
Eduardo M
EM
da Silva
Aline M
AM
Verjovski-Almeida
Sergio
S
D019295:Computational Biology / Q000379:methods; D003628:Database Management Systems; D004282:Documentation; D020224:Expressed Sequence Tags; D020869:Gene Expression Profiling / Q000379:methods*; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D014584:User-Computer Interface