title: Tumor necrosis factor haplotype analysis amongst schizophrenia probands from four distinct populations in the Asia-Pacific region.
abstract: A single nucleotide polymorphism (TNF(-308A)) within the promoter region of the gene encoding tumor necrosis factor (TNF), has been significantly associated with schizophrenia in a study of Italian patients and control subjects Boin et al. [2001: Mol Psychiatry 6:79-82]. We have applied case-control analyses to examine TNF promoter haplotypes (containing TNF(-308) and two additional promoter variants: TNF(-376) and TNF(-238)) in four schizophrenia cohorts drawn from Australian, Indian Fijian, Indigenous Fijian, and Brahmin populations. In addition, we have applied the sibling transmission disequilibrium (STD) test to promoter haplotypes within 81 trios drawn from Australian Caucasian pedigrees with multiple schizophrenia cases, and 86 trios drawn from the Brahmin population of Tamil Nadu province in Southern India. Within each of these cohorts, we found no evidence of recombination between these tightly linked promoter variants, supporting previous studies which demonstrated that only a subset of the eight possible haplotypes exist. Of the four observed haplotypes, we and others have observed only one carries the TNF(-308A) variant allele. We report no significant differences in TNF promoter haplotype frequencies between the patient and control groups within each population, although the Indian Fijian cohort showed a trend towards reduced TNF(-308A) alleles amongst schizophrenia cases (P = 0.07). We found no evidence of bias in TNF promoter haplotype transmission to schizophrenia probands. Very similar results were obtained when only the TNF(-308) polymorphism was considered. Taken together, these data provide no support for the involvement of TNF promoter variants TNF(-308), TNF(-376), and TNF(-238) in schizophrenia susceptibility within four ethnically distinct cohorts.
authors.affiliation: Queensland Centre for Schizophrenia Research, The Park, Centre for Mental Health, Wacol, Queensland, Australia.
authors.forename: Herlina Y
authors.initials: HY
authors.lastname: Handoko
authors.forename: Derek J
authors.initials: DJ
authors.lastname: Nancarrow
authors.forename: Nicholas K
authors.initials: NK
authors.lastname: Hayward
authors.forename: Jude U
authors.initials: JU
authors.lastname: Ohaeri
authors.forename: Henry
authors.initials: H
authors.lastname: Aghanwa
authors.forename: John J
authors.initials: JJ
authors.lastname: McGrath
authors.forename: Douglas F
authors.initials: DF
authors.lastname: Levinson
authors.forename: Christopher
authors.initials: C
authors.lastname: Johns
authors.forename: Marilyn K
authors.initials: MK
authors.lastname: Walters
authors.forename: Deborah A
authors.initials: DA
authors.lastname: Nertney
authors.forename: T N
authors.initials: TN
authors.lastname: Srinivasan
authors.forename: R
authors.initials: R
authors.lastname: Thara
authors.forename: Bryan J
authors.initials: BJ
authors.lastname: Mowry
mesh_terms: D001315:Australia; D005367:Fiji; D006239:Haplotypes; D006801:Humans; D011401:Promoter Regions, Genetic; D012559:Schizophrenia / Q000235:genetics*; D014409:Tumor Necrosis Factor-alpha / Q000235:genetics*
chemical_list: D014409:Tumor Necrosis Factor-alpha