A comparative proteomics resource: proteins of Arabidopsis thaliana.
Using an integrative genome annotation pipeline (iGAP) for proteome-wide protein structure and functional domain assignment, we analyzed all the proteins of Arabidopsis thaliana. Three-dimensional structures at the level of the domain are assigned by fold recognition and threading based on a novel fold library that extends common domain classifications. iGAP is being applied to proteins from all available proteomes as part of a comparative proteomics resource. The database is accessible from the web.
Li
Wilfred W
WW
San Diego Supercomputer Center, 9500 Gilman Drive, University of California San Diego, La Jolla, CA 92093-0505, USA. bourne@sdsc.edu
Quinn
Greg B
GB
Alexandrov
Nickolai N
NN
Bourne
Philip E
PE
Shindyalov
Ilya N
IN
D017360:Arabidopsis / Q000235:genetics*; D029681:Arabidopsis Proteins / Q000145:classification / Q000235:genetics*; D018745:Genome, Plant; D020543:Proteome / Q000235:genetics; D040901:Proteomics / Q000145:classification / Q000379:methods*; D012984:Software
D029681:Arabidopsis Proteins; D020543:Proteome