title: A comparative proteomics resource: proteins of Arabidopsis thaliana.
abstract: Using an integrative genome annotation pipeline (iGAP) for proteome-wide protein structure and functional domain assignment, we analyzed all the proteins of Arabidopsis thaliana. Three-dimensional structures at the level of the domain are assigned by fold recognition and threading based on a novel fold library that extends common domain classifications. iGAP is being applied to proteins from all available proteomes as part of a comparative proteomics resource. The database is accessible from the web.
authors.affiliation: San Diego Supercomputer Center, 9500 Gilman Drive, University of California San Diego, La Jolla, CA 92093-0505, USA. bourne@sdsc.edu
authors.forename: Wilfred W
authors.initials: WW
authors.lastname: Li
authors.forename: Greg B
authors.initials: GB
authors.lastname: Quinn
authors.forename: Nickolai N
authors.initials: NN
authors.lastname: Alexandrov
authors.forename: Philip E
authors.initials: PE
authors.lastname: Bourne
authors.forename: Ilya N
authors.initials: IN
authors.lastname: Shindyalov
mesh_terms: D017360:Arabidopsis / Q000235:genetics*; D029681:Arabidopsis Proteins / Q000145:classification / Q000235:genetics*; D018745:Genome, Plant; D020543:Proteome / Q000235:genetics; D040901:Proteomics / Q000145:classification / Q000379:methods*; D012984:Software
chemical_list: D029681:Arabidopsis Proteins; D020543:Proteome