title: Advantages of external periodic events to the evolution of biochemical oscillatory reactions.
abstract: We compare, by calculations on a simple model of glycolysis, the evolutionary development of oscillatory reaction mechanisms in the presence and absence of external periodic events, such as an oscillatory or constant influx of glucose in an open reaction system. The chosen model has autonomous oscillations for given choices of the parameters of the feedback loops responsible for the oscillations, and for a given range of the total adenylate pool concentration. We change first one, then two of the parameters, so that there are no autonomous oscillations, and then vary these parameters with a genetic algorithm method in which the parameters are represented by binary strings that evolve by selection, crossover, and mutations; the optimization goal is the attainment of a high ATP/ADP concentration ratio in the system. This goal is taken to provide evolutionary advantages and is shown to be achieved more quickly in the presence of external periodic events, rather than constant influx of glucose. The results suggest the possibility of the enhanced evolutionary development of oscillatory biological reactions at shores where waves impinge on rocks and bring nutrients periodically. Measurements have shown that animals and plants grow more rapidly in the presence of such wave action than in its absence.
authors.affiliation: Stanford Genome Technology Center, Stanford University School of Medicine, 855 California Avenue, Palo Alto, CA 94304, USA.
authors.forename: Masa
authors.initials: M
authors.lastname: Tsuchiya
authors.forename: John
authors.initials: J
authors.lastname: Ross
mesh_terms: D000244:Adenosine Diphosphate / Q000378:metabolism; D000255:Adenosine Triphosphate / Q000378:metabolism; D000465:Algorithms; D005075:Biological Evolution; D006019:Glycolysis; D007700:Kinetics; D008954:Models, Biological; D010507:Periodicity
chemical_list: D000244:Adenosine Diphosphate; D000255:Adenosine Triphosphate