title: A survey of chromosomal and nucleotide sequence variation in Drosophila miranda.
abstract: There have recently been several studies of the evolution of Y chromosome degeneration and dosage compensation using the neo-sex chromosomes of Drosophila miranda as a model system. To understand these evolutionary processes more fully, it is necessary to document the general pattern of genetic variation in this species. Here we report a survey of chromosomal variation, as well as polymorphism and divergence data, for 12 nuclear genes of D. miranda. These genes exhibit varying levels of DNA sequence polymorphism. Compared to its well-studied sibling species D. pseudoobscura, D. miranda has much less nucleotide sequence variation, and the effective population size of this species is inferred to be several-fold lower. Nevertheless, it harbors a few inversion polymorphisms, one of which involves the neo-X chromosome. There is no convincing evidence for a recent population expansion in D. miranda, in contrast to D. pseudoobscura. The pattern of population subdivision previously observed for the X-linked gene period is not seen for the other loci, suggesting that there is no general population subdivision in D. miranda. However, data on an additional region of period confirm population subdivision for this gene, suggesting that local selection is operating at or near period to promote differentiation between populations.
authors.affiliation: Department of Ecology and Evolution, University of Chicago, 1101 E. 57th Street, Chicago, IL 60637-1573, USA. soojinyi@midway.uchicago.edu
authors.forename: Soojin
authors.initials: S
authors.lastname: Yi
authors.forename: Doris
authors.initials: D
authors.lastname: Bachtrog
authors.forename: Brian
authors.initials: B
authors.lastname: Charlesworth
mesh_terms: D000483:Alleles; D000818:Animals; D001483:Base Sequence / Q000235:genetics*; D007446:Chromosome Inversion; D002874:Chromosome Mapping; D002875:Chromosomes / Q000235:genetics*; D004330:Drosophila / Q000235:genetics*; D029721:Drosophila Proteins; D019143:Evolution, Molecular; D005091:Exons; D017344:Genes, Insect; D008040:Genetic Linkage; D014644:Genetic Variation; D005828:Genetics, Population; D008969:Molecular Sequence Data; D009687:Nuclear Proteins / Q000235:genetics; D056950:Period Circadian Proteins; D011110:Polymorphism, Genetic; D014960:X Chromosome / Q000235:genetics; D014998:Y Chromosome / Q000235:genetics
chemical_list: D029721:Drosophila Proteins; D009687:Nuclear Proteins; C539040:PER protein, Drosophila; D056950:Period Circadian Proteins