title: Subtyping intimin genes from enteropathogenic Escherichia coli associated with outbreaks and sporadic cases in the United Kingdom and Eire.
abstract: PCR-RFLP methods for subtyping the intimin gene from strains of typical and atypical enteropathogenic Escherichia coli (EPEC) and Verocytotoxin-producing E. coli (VTEC) were compared. A novel HhaI PCR-RFLP method was developed that was rapid, easy to use and amplified an 1852 bp fragment of the intimin gene from all isolates examined. This method was used to investigate the intimin sub-types of EPEC strains associated with 14 outbreaks of diarrhoeal disease between 1967 and 2001, and 20 sporadic cases between January and December 2000, in the UK and Eire. In this study, genes encoding alpha, beta, gamma, delta and zeta-intimin were detected in the EPEC strains associated with outbreaks and beta, gamma, epsilon, theta and zeta-intimin genes were identified in isolates from sporadic cases. The beta-intimin gene was the most frequently detected sub-type in both the outbreak and sporadic strains.
authors.affiliation: Laboratory of Enteric Pathogens, Central Public Health Laboratory, Specialist and Reference Microbiology Division, Health Protection Agency, 61 Colindale Avenue, NW9 5HT, London, UK. claire.jenkins@hpa.org.uk
authors.forename: C
authors.initials: C
authors.lastname: Jenkins
authors.forename: A J
authors.initials: AJ
authors.lastname: Lawson
authors.forename: T
authors.initials: T
authors.lastname: Cheasty
authors.forename: G A
authors.initials: GA
authors.lastname: Willshaw
authors.forename: P
authors.initials: P
authors.lastname: Wright
authors.forename: G
authors.initials: G
authors.lastname: Dougan
authors.forename: G
authors.initials: G
authors.lastname: Frankel
authors.forename: H R
authors.initials: HR
authors.lastname: Smith
mesh_terms: D018829:Adhesins, Bacterial / Q000235:genetics*; D000328:Adult; D000818:Animals; D002352:Carrier Proteins / Q000235:genetics*; D002417:Cattle; D002675:Child, Preschool; D003967:Diarrhea / Q000382:microbiology / Q000662:veterinary; D004196:Disease Outbreaks; D004285:Dogs; D004926:Escherichia coli / Q000145:classification / Q000235:genetics* / Q000472:pathogenicity*; D004927:Escherichia coli Infections / Q000453:epidemiology / Q000382:microbiology* / Q000662:veterinary; D029968:Escherichia coli Proteins; D006801:Humans; D007223:Infant; D007494:Ireland / Q000453:epidemiology; D008875:Middle Aged; D010802:Phylogeny; D016133:Polymerase Chain Reaction / Q000379:methods*; D012150:Polymorphism, Restriction Fragment Length; D006113:United Kingdom / Q000453:epidemiology; D014774:Virulence / Q000235:genetics
chemical_list: D018829:Adhesins, Bacterial; D002352:Carrier Proteins; D029968:Escherichia coli Proteins; C073819:eaeA protein, E coli