title: Elucidation of the structure of the lipopolysaccharide core and the linkage between the core and the O-antigen in Pseudomonas aeruginosa immunotype 5 using strong alkaline degradation of the lipopolysaccharide.
abstract: The products of the strong alkaline degradation of the lipopolysaccharide (LPS) of Pseudomonas aeruginosa immunotype 5 were separated by anion-exchange HPLC and studied by electrospray ionization mass spectrometry and NMR spectroscopy. It was found that two major products have the same inner core region and lipid A carbohydrate backbone (A) but different outer core regions (B and C). The difference is in the position of a rhamnose residue, which is substituted with either an additional glucose residue (B) or a disaccharide remainder of the degraded O-polysaccharide (C). The site and the configuration of the linkage between the O-polysaccharide and the core were determined and, together with published data, the structure of the so-called biological repeating unit of the O-antigen was defined (D). The glycosidic linkage of the quinovosamine residue is beta when it links the O-polysaccharide to the core (C) and alpha when it connects the interior repeating units of the O-polysaccharide to each other (D) [Formula: see text]. In the structures shown Rha stands for rhamnose, Kdo for 3-deoxy-D-manno-oct-2-ulosonic acid, Hep for L-glycero-D-manno-heptose, GalNAcA for 2-acetamido-2-deoxygalacturonic acid, QuiN for 2-amino-2,6-dideoxyglucose (quinovosamine), DeltaHexNA for 2-amino-2-deoxy-D-threo-hex-4-enuronic acid; all monosaccharides are in the pyranose form and have the D configuration, except for Rha and GalNAcA that have the L configuration. In C, the remainder of the degraded O-polysaccharide is shown in bold type.
authors.affiliation: Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, 119991 Russia.
authors.forename: O V
authors.initials: OV
authors.lastname: Bystrova
authors.forename: A S
authors.initials: AS
authors.lastname: Shashkov
authors.forename: N A
authors.initials: NA
authors.lastname: Kocharova
authors.forename: Y A
authors.initials: YA
authors.lastname: Knirel
authors.forename: U
authors.initials: U
authors.lastname: Zähringer
authors.forename: G B
authors.initials: GB
authors.lastname: Pier
mesh_terms: D000117:Acetylglucosamine / Q000031:analogs & derivatives*; D008050:Lipid A / Q000737:chemistry; D008070:Lipopolysaccharides / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy; D019081:O Antigens / Q000737:chemistry / Q000276:immunology*; D011550:Pseudomonas aeruginosa / Q000737:chemistry* / Q000276:immunology; D012210:Rhamnose / Q000737:chemistry; D021241:Spectrometry, Mass, Electrospray Ionization
chemical_list: C113291:2-acetamido-2,6-dideoxy-glucose (N-acetyl-quinovosamine); D008050:Lipid A; D008070:Lipopolysaccharides; D019081:O Antigens; D012210:Rhamnose; D000117:Acetylglucosamine