title: Additive polymorphisms and reticulation in an ITS phylogeny of thrifts (Armeria, Plumbaginaceae).
abstract: A parsimony analysis of 133 sequences of the nuclear ribosomal DNA ITS1+5.8S+ITS2 region from 71 taxa in Armeria was carried out. The presence of additive polymorphic sites (APS; occurring in 14 accessions) fits the reticulate scenario proposed in previous work for explaining the ITS pattern of variation on a much smaller scale and is based mainly on the geographical structure of the data, irrespective of taxonomic boundaries. Despite the relatively low bootstrap values and large polytomies, part of which are likely due to disruptive effects of reticulation and concerted evolution in these multicopy sequences, the ITS analysis has phylogenetic and biogeographic implications. APS detected in this study are consistent with hypothesized hybridization events, although biased concerted evolution, previously documented in the genus, needs to be invoked for specific cases and may be responsible for a possible "sink" effect in terminals from a large clade. The causes for sequences of the same species appearing in different clades (here termed transclade) are discussed.
authors.affiliation: Real Jardin Botánico, CSIC, Plaza de Murillo, 2, 28014 Madrid, Spain.
authors.forename: Javier
authors.initials: J
authors.lastname: Fuertes Aguilar
authors.forename: Gonzalo
authors.initials: G
authors.lastname: Nieto Feliner
mesh_terms: D001483:Base Sequence; D004275:DNA, Ribosomal / Q000235:genetics; D005843:Geography; D006824:Hybridization, Genetic; D008957:Models, Genetic; D008969:Molecular Sequence Data; D010802:Phylogeny; D029606:Plumbaginaceae / Q000235:genetics*; D011110:Polymorphism, Genetic; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA
chemical_list: D004275:DNA, Ribosomal