title: Rapid assignment of swine leukocyte antigen haplotypes in pedigreed herds using a polymerase chain reaction-based assay.
abstract: We present a simple assay to determine the swine leukocyte antigen (SLA) haplotypes of animals within two experimental populations of MHC defined miniature pigs. The Yucatan miniature pigs have four founder haplotypes ( w, x, y, z) and one recombinant haplotype ( q). The NIH miniature pigs have three founder haplotypes ( a, c, d) and two recombinant haplotypes ( f, g). Because most crossovers occur between the class I and class II regions, haplotypes can be assigned by typing one class I locus and one class II locus for practical purposes. We have previously characterized these seven founder haplotypes by sequencing the cDNA of three SLA class I loci, designated as SLA-1, SLA-3 and SLA-2 and four SLA class II loci, SLA-DQA1, SLA-DQB1, SLA-DRA1 and SLA-DRB1. These sequences were used to design allele-specific primers to amplify one MHC class I and one MHC class II gene for each haplotype. Primers were tested for specificity in homozygous and heterozygous animals. Positive control primers were also designed to amplify a portion of the E-selectin or alpha-actin gene and multiplexed with the allele-specific primers to check for false negatives. This combination of allele-specific and positive control primers produced specific and robust PCR-site-specific primer assays for assigning SLA haplotypes in the two populations.
authors.affiliation: Pathology Department, Baylor University Medical Center, 3500 Junius St., Dallas, TX 75246, USA.
authors.forename: Gregory W
authors.initials: GW
authors.lastname: Martens
authors.forename: Joan K
authors.initials: JK
authors.lastname: Lunney
authors.forename: Judy E
authors.initials: JE
authors.lastname: Baker
authors.forename: Douglas M
authors.initials: DM
authors.lastname: Smith
mesh_terms: D000818:Animals; D006239:Haplotypes; D006649:Histocompatibility Antigens / Q000032:analysis* / Q000145:classification; D016133:Polymerase Chain Reaction; D013552:Swine / Q000276:immunology*
chemical_list: D006649:Histocompatibility Antigens