title: Identification of TDE2 gene and its expression in non-small cell lung cancer.
abstract: TDE2, a gene with sequence similarity to the mouse testicular tumor-differentially-expressed (Tde1/MUSTETU) gene, was identified by serial analysis of gene expression (SAGE) in nonsmall cell lung cancers (NSCLC). Here we characterized the TDE2 gene and determined its transcript levels in a panel of lung tumors, adjacent nonmalignant lung tissues and a variety of normal human tissues. In addition, we show that TDE2 is a potential transmembrane protein with 11 putative transmembrane helices. Using real-time quantitative PCR, we showed that TDE2 transcript levels were higher in NSCLC compared to nonmalignant samples. In nonpulmonary normal tissues, the level of TDE2 was the highest in bladder, kidney and muscle; moderate to low in stomach, liver, skin, placenta and ovary tissues; and undetectable in brain, spleen and heart. By in situ hybridization, we showed that 10 of 18 lung tumors and only 1 of 14 adjacent nonmalignant regions had high levels of TDE2 transcripts. Alternatively, only 2 of 18 tumors and 8 of 14 adjacent nonmalignant bronchiole epithelium regions demonstrated negative to low levels of TDE2 signals.
authors.affiliation: Laboratory of Population Genetics, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA.
authors.forename: Audrey
authors.initials: A
authors.lastname: Player
authors.forename: John
authors.initials: J
authors.lastname: Gillespie
authors.forename: Takeshi
authors.initials: T
authors.lastname: Fujii
authors.forename: Junya
authors.initials: J
authors.lastname: Fukuoka
authors.forename: Tatiana
authors.initials: T
authors.lastname: Dracheva
authors.forename: Dauod
authors.initials: D
authors.lastname: Meerzaman
authors.forename: Kyeong Man
authors.initials: KM
authors.lastname: Hong
authors.forename: John
authors.initials: J
authors.lastname: Curran
authors.forename: Goziam
authors.initials: G
authors.lastname: Attoh
authors.forename: William
authors.initials: W
authors.lastname: Travis
authors.forename: Jin
authors.initials: J
authors.lastname: Jen
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D002289:Carcinoma, Non-Small-Cell Lung / Q000235:genetics* / Q000378:metabolism / Q000473:pathology; D002478:Cells, Cultured; D018628:Gene Dosage; D015972:Gene Expression Regulation, Neoplastic; D006801:Humans; D017403:In Situ Hybridization; D008175:Lung Neoplasms / Q000235:genetics* / Q000378:metabolism / Q000473:pathology; D008565:Membrane Proteins / Q000235:genetics* / Q000378:metabolism; D051379:Mice; D008969:Molecular Sequence Data; D009363:Neoplasm Proteins / Q000235:genetics* / Q000378:metabolism; D015347:RNA Probes; D012333:RNA, Messenger / Q000378:metabolism; D020133:Reverse Transcriptase Polymerase Chain Reaction; D017386:Sequence Homology, Amino Acid; D014018:Tissue Distribution
chemical_list: D008565:Membrane Proteins; D009363:Neoplasm Proteins; D015347:RNA Probes; D012333:RNA, Messenger; C477932:SERINC1 protein, human; C406670:Tde2 protein, mouse