title: RNA aptamer evaluation using comparative molecular interaction profile analysis system.
abstract: In this paper, we introduce a system named Comparative Molecular Interaction Profile Analysis system (CoMIPA) that utilizes virtual docking study for comprehensive analysis of molecular interactions. Research of RNA aptamer is very useful to creation of functional molecules, because RNA aptamer is excellent in binding selectivity and the stability of structure. By using 3-bases RNA fragment, the system can use computational molecular docking results to help for RNA aptamer screening. We believe that the system has the potential to be a useful for RNA aptamer design.
mesh_terms: D001665:Binding Sites; D019295:Computational Biology; D008958:Models, Molecular; D012313:RNA / Q000737:chemistry*
chemical_list: D012313:RNA