Molecular characterization of the VP4, VP6, VP7, and NSP4 genes of lapine rotaviruses identified in italy: emergence of a novel VP4 genotype.
The genes encoding the glycoprotein VP7, the VP8* trypsin-cleavage product of the protein VP4, a fragment of the protein VP6 associated with subgroup (SG) specificity, and the enterotoxin NSP4 of rotavirus strains identified in diarrheic fecal samples of rabbits in Italy were sequenced. The Italian lapine rotavirus (LRV) strains possessed a G3 VP7, SG I VP6, and KUN-like NSP4, a gene constellation typical of LRVs. One LRV strain (30/96), isolated in 1996, shared the closest amino acid (aa) identity (87-96%) with the P[14] genotype, composed of human and LRV strains. Conversely, three LRV strains (160/01, 229/01, and 308/01), identified in 2001, were highly identical (90-95%) among each other, but showed low aa identity (34-77%) to the VP8* genotype-specific sequences of representative rotavirus strains of all remaining P genotypes. This report confirms the worldwide genetic constellations of LRVs and identifies a novel VP4 genotype in rabbits, tentatively proposed as genotype P[22].
D000595:Amino Acid Sequence; D000818:Animals; D000956:Antigens, Viral; D036022:Capsid Proteins / Q000235:genetics*; D012321:DNA-Directed RNA Polymerases; D003967:Diarrhea / Q000662:veterinary* / Q000821:virology; D005838:Genotype; D007558:Italy; D008969:Molecular Sequence Data; D010802:Phylogeny; D011817:Rabbits / Q000821:virology*; D012401:Rotavirus / Q000145:classification* / Q000235:genetics / Q000378:metabolism; D012400:Rotavirus Infections / Q000662:veterinary / Q000821:virology; D017422:Sequence Analysis, DNA; D012703:Serotyping; D017361:Viral Nonstructural Proteins / Q000235:genetics*
D000956:Antigens, Viral; D036022:Capsid Proteins; C060339:VP4 protein, Rotavirus; C061332:VP6 protein, Rotavirus; C050779:VP7 protein, Rotavirus; D017361:Viral Nonstructural Proteins; D012321:DNA-Directed RNA Polymerases