title: Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils.
abstract: We investigated communities of denitrifying bacteria from adjacent meadow and forest soils. Our objectives were to explore spatial gradients in denitrifier communities from meadow to forest, examine whether community composition was related to ecological properties (such as vegetation type and process rates), and determine phylogenetic relationships among denitrifiers. nosZ, a key gene in the denitrification pathway for nitrous oxide reductase, served as a marker for denitrifying bacteria. Denitrifying enzyme activity (DEA) was measured as a proxy for function. Other variables, such as nitrification potential and soil C/N ratio, were also measured. Soil samples were taken along transects that spanned meadow-forest boundaries at two sites in the H. J. Andrews Experimental Forest in the Western Cascade Mountains of Oregon. Results indicated strong functional and structural community differences between the meadow and forest soils. Levels of DEA were an order of magnitude higher in the meadow soils. Denitrifying community composition was related to process rates and vegetation type as determined on the basis of multivariate analyses of nosZ terminal restriction fragment length polymorphism profiles. Denitrifier communities formed distinct groups according to vegetation type and site. Screening 225 nosZ clones yielded 47 unique denitrifying genotypes; the most dominant genotype occurred 31 times, and half the genotypes occurred once. Several dominant and less-dominant denitrifying genotypes were more characteristic of either meadow or forest soils. The majority of nosZ fragments sequenced from meadow or forest soils were most similar to nosZ from the Rhizobiaceae group in alpha-Proteobacteria species. Denitrifying community composition, as well as environmental factors, may contribute to the variability of denitrification rates in these systems.
authors.affiliation: Departments of Crop and Soil Science, Oregon State University, Corvallis, Oregon 97331, USA.
authors.forename: J J
authors.initials: JJ
authors.lastname: Rich
authors.forename: R S
authors.initials: RS
authors.lastname: Heichen
authors.forename: P J
authors.initials: PJ
authors.lastname: Bottomley
authors.forename: K
authors.initials: K
authors.lastname: Cromack
authors.forename: D D
authors.initials: DD
authors.lastname: Myrold
mesh_terms: D000531:Altitude; D017753:Ecosystem; D008969:Molecular Sequence Data; D009566:Nitrates / Q000378:metabolism*; D009922:Oregon; D010088:Oxidoreductases / Q000235:genetics / Q000378:metabolism; D010802:Phylogeny; D006109:Poaceae; D016133:Polymerase Chain Reaction; D012150:Polymorphism, Restriction Fragment Length; D012230:Rhizobiaceae / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology; D014197:Trees
chemical_list: D009566:Nitrates; D010088:Oxidoreductases; C022763:nitrous oxide reductase