title: Physicochemical effects in the representation of molecular structures for drug designing.
abstract: After the identification of a biological target, drug design is to analyze the relationships between the structure of potential ligands and their biological activity. A hierarchy of structure representation is presented here considering either the constitution of a molecule, its 3D structure, or the molecular surface. At each level, a variety of physicochemical effects can be accounted for. Furthermore, the special requirements of learning algorithm, such as neural networks, are taken into consideration. Application to problems from combinatorial chemistry, lead identification, high-throughput screening, and prediction of ADME-Tox properties are given.
authors.affiliation: Computer-Chemie-Centrum and Institute of Organic Chemistry, University of Erlangen-Nuremberg, Nägelsbachstrasse 25, 91052 Erlangen, Germany. gasteiger@chemie.uni-erlangen.de
authors.forename: Johann
authors.initials: J
authors.lastname: Gasteiger
mesh_terms: D055598:Chemical Phenomena; D002627:Chemistry, Physical; D015195:Drug Design; D008958:Models, Molecular; D008968:Molecular Conformation; D015394:Molecular Structure; D004364:Pharmaceutical Preparations / Q000737:chemistry*; D013329:Structure-Activity Relationship
chemical_list: D004364:Pharmaceutical Preparations