title: Structure and functional genomics of lipopolysaccharide expression in Haemophilus influenzae.
abstract: The involvement of genes in the lic loci in H. influenzae LPS expression has been known for some time. However, it was not until recently that it was shown that the lic1 locus contains genes required for phase variable expression of phosphocholine substituents, while genes in the lic2 locus and lgtC are required for expression of the globoside trisaccharide, alpha-D-Galp-(1 --> 4)-beta-D-Galp-(1 --> 4)-beta-D-Glcp (i.e., the pK blood group epitope). The availability of the complete sequence of the H. influenzae strain Rd genome has facilitated significant progress in understanding the role of these and other genes in the expression and biosynthesis of LPS. We have employed a comparative structural fingerprinting strategy to establish the structural relationships among LPS from H. influenzae mutant strains in which putative biosynthesis genes were inactivated. Using this functional genomics approach, we have gained considerable insight into the genetic basis for intra-strain and strain-to-strain variation in epitope expression.
authors.affiliation: Institute for Biological Sciences, National Research Council, Ottawa, Ontario, da, K1A 0R6, Canada. jim.richards@nrc.ca
authors.forename: J C
authors.initials: JC
authors.lastname: Richards
authors.forename: A D
authors.initials: AD
authors.lastname: Cox
authors.forename: E K
authors.initials: EK
authors.lastname: Schweda
authors.forename: A
authors.initials: A
authors.lastname: Martin
authors.forename: D W
authors.initials: DW
authors.lastname: Hood
authors.forename: E R
authors.initials: ER
authors.lastname: Moxon
mesh_terms: D001483:Base Sequence; D002240:Carbohydrate Sequence; D004269:DNA, Bacterial / Q000235:genetics; D015870:Gene Expression; D005798:Genes, Bacterial; D023281:Genomics; D006193:Haemophilus influenzae / Q000145:classification / Q000235:genetics*; D019741:Haemophilus influenzae type b / Q000235:genetics; D008070:Lipopolysaccharides / Q000737:chemistry*; D008969:Molecular Sequence Data; D015394:Molecular Structure; D009154:Mutation; D021241:Spectrometry, Mass, Electrospray Ionization
chemical_list: D004269:DNA, Bacterial; D008070:Lipopolysaccharides