[Computer analysis of regulating metabolism of glycerol-3-phosphate in proteobacteria genome].
Comparative computer-assisted analysis was used to study putative GlpR-regulons responsible for metabolism of glycerol and glycerol-3-phosphate in genomes of alpha-, beta-, and gamma-proteobacteria. New palindromic GlpR-binding signals were identified in gamma-proteobacteria; consensus sequences being TGTTCGATAACGAACA for Enterobacteriaceae, wTTTTCGTATACGAAAAw for Pseudomonadaceae, and AATGCTCGATCGAGCATT for Vibrionaceae. The signals in alpha- and beta-proteobacteria were also identified: they contained 3-4 direct TTTCGTT repeats separated by 3-4 nucleotide pairs.
Danilova
L V
LV
Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, 101447 Russia. dlv2k@mail.ru
Gel'fand
M S
MS
Liubetskiĭ
V A
VA
Laĭkova
O N
ON
D001483:Base Sequence; D017931:DNA Primers; D016680:Genome, Bacterial; D005994:Glycerophosphates / Q000378:metabolism*; D010802:Phylogeny; D020560:Proteobacteria / Q000235:genetics*; D012091:Repetitive Sequences, Nucleic Acid
D017931:DNA Primers; D005994:Glycerophosphates; C029620:alpha-glycerophosphoric acid