GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data.
CONCLUSIONS
Genomic Analysis and Rapid Biological ANnotation (GARBAN) is a new tool that provides an integrated framework to analyze simultaneously and compare multiple data sets derived from microarray or proteomic experiments. It carries out automated classifications of genes or proteins according to the criteria of the Gene Ontology Consortium at a level of depth defined by the user. Additionally, it performs clustering analysis of all sets based on functional categories or on differential expression levels. GARBAN also provides graphical representations of the biological pathways in which all the genes/proteins participate.


BACKGROUND
http://garban.tecnun.es.
Martínez-Cruz
Luis A
LA
Department of Internal Medicine, Unit of Proteomics, Genomics and Bioinformatics, University of Navarra, Pamplona-31008, Spain.
Rubio
Angel
A
Martínez-Chantar
María L
ML
Labarga
Alberto
A
Barrio
Isabel
I
Podhorski
Adam
A
Segura
Victor
V
Sevilla Campo
José L
JL
Avila
Matías A
MA
Mato
Jose M
JM
D000465:Algorithms; D003628:Database Management Systems; D030561:Databases, Nucleic Acid; D030562:Databases, Protein; D004282:Documentation; D020869:Gene Expression Profiling / Q000379:methods*; D023281:Genomics / Q000379:methods; D016247:Information Storage and Retrieval / Q000379:methods*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D040901:Proteomics / Q000379:methods*; D012984:Software; D014584:User-Computer Interface