Excavating Y-chromosome haplotype strata in Anatolia.
Analysis of 89 biallelic polymorphisms in 523 Turkish Y chromosomes revealed 52 distinct haplotypes with considerable haplogroup substructure, as exemplified by their respective levels of accumulated diversity at ten short tandem repeat (STR) loci. The major components (haplogroups E3b, G, J, I, L, N, K2, and R1; 94.1%) are shared with European and neighboring Near Eastern populations and contrast with only a minor share of haplogroups related to Central Asian (C, Q and O; 3.4%), Indian (H, R2; 1.5%) and African (A, E3*, E3a; 1%) affinity. The expansion times for 20 haplogroup assemblages was estimated from associated STR diversity. This comprehensive characterization of Y-chromosome heritage addresses many multifaceted aspects of Anatolian prehistory, including: (1) the most frequent haplogroup, J, splits into two sub-clades, one of which (J2) shows decreasing variances with increasing latitude, compatible with a northward expansion; (2) haplogroups G1 and L show affinities with south Caucasus populations in their geographic distribution as well as STR motifs; (3) frequency of haplogroup I, which originated in Europe, declines with increasing longitude, indicating gene flow arriving from Europe; (4) conversely, haplogroup G2 radiates towards Europe; (5) haplogroup E3b3 displays a latitudinal correlation with decreasing frequency northward; (6) haplogroup R1b3 emanates from Turkey towards Southeast Europe and Caucasia and; (7) high resolution SNP analysis provides evidence of a detectable yet weak signal (<9%) of recent paternal gene flow from Central Asia. The variety of Turkish haplotypes is witness to Turkey being both an important source and recipient of gene flow.
Cinnioğlu
Cengiz
C
Department of Genetics, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA 94305-5120, USA.
King
Roy
R
Kivisild
Toomas
T
Kalfoğlu
Ersi
E
Atasoy
Sevil
S
Cavalleri
Gianpiero L
GL
Lillie
Anita S
AS
Roseman
Charles C
CC
Lin
Alice A
AA
Prince
Kristina
K
Oefner
Peter J
PJ
Shen
Peidong
P
Semino
Ornella
O
Cavalli-Sforza
L Luca
LL
Underhill
Peter A
PA
D000352:Africa, Northern; D001209:Asia, Central; D041322:Chromosomes, Human, Y / Q000235:genetics*; D004247:DNA / Q000235:genetics; D004641:Emigration and Immigration; D005006:Ethnicity / Q000235:genetics*; D005060:Europe; D005787:Gene Frequency; D014644:Genetic Variation; D005843:Geography; D006239:Haplotypes / Q000235:genetics*; D006801:Humans; D008297:Male; D010802:Phylogeny; D011110:Polymorphism, Genetic; D020080:Tandem Repeat Sequences; D014421:Turkey
D004247:DNA