[Search for conservative secondary structures of RNA].
We suggest a new algorithm to search a given set of the RNA sequences for conserved secondary structures. The algorithm is based on alignment of the sequences for potential helical strands. This procedure can be used to search for new structured RNAs and new regulatory elements. It is efficient for the genome-scale analysis. The results of various tests run with this algorithm are shown.
Institute for Information Transmission Problems, Russian Academy of Sciences, Moscow, 101447 Russia. gorbunov@iitp.ru
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KIu
Gorbunov
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Mironov
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Liubetskiĭ
D000465:Algorithms; D001483:Base Sequence; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry*
D012313:RNA