LDA--a java-based linkage disequilibrium analyzer.
We describe an integrated java-based program that provides elaborate graphic and plain-text output of pairwise linkage disequilibrium (LD) analysis of single nucleotide polymorphisms genotypic data. It is most suitable for molecular geneticists, who are focusing on LD measures estimation, statistical significance test and extent prediction.


BACKGROUND
The software is available at: http://www.chgb.org.cn/lda/lda.htm.


BACKGROUND
Detailed tutorials, LDA help system and examples are distributed within LDA software. For Macintosh OS X user, the Jre version 1.4 can be downloaded from http://connect.apple.com.
Ding
Keyue
K
Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (and Peking Union Medical College, National Laboratory of Medical Molecular Biology, Beijing, 100005, People's Republic of China.
Zhou
Kaixin
K
He
Fuchu
F
Shen
Yan
Y
D000465:Algorithms; D003628:Database Management Systems; D020869:Gene Expression Profiling / Q000379:methods*; D005787:Gene Frequency; D019146:Hypermedia; D015810:Linkage Disequilibrium / Q000235:genetics*; D020641:Polymorphism, Single Nucleotide / Q000235:genetics*; D016415:Sequence Alignment / Q000379:methods*; D014584:User-Computer Interface