Isolation and characterization of the first non-autonomous transposable element in amphioxus, ATE-1.
We report the first class II transposon in cephalochordates, which we have named Amphioxus Transposable Element 1 (ATE-1). ATE-1 members have been identified in the genome of Branchiostoma lanceolatum (BlATE-1) and B. floridae (BfATE-1). Structural analysis revealed that ATE-1 elements consist of a central region (CR) with no homology with any coding sequence, nor any detectable open reading frame (ORF), flanked by internal direct repeats (DR) of about 100 nt, each adjacent to a terminal inverted repeat (TIR) of 16 nt. Although the estimated copy number in the amphioxus genome is low, there is evidence of mobility. Sequence and hybridization analyses pointed to TIR and DR inter-species conservation, whereas no structural similarities among the CR were detected. Moreover, this element is found in two amphioxus species that diverged long ago, which argues in favor of its ancient origin. However, the structural hallmarks needed for transposition are still preserved.
Cañestro
Cristian
C
Departament de Genètica, Facultat de Biologia, Universitat de Barcelona, Av. Diagonal, 645, E-08028 Barcelona, Spain.
Albalat
Ricard
R
Gonzàlez-Duarte
Roser
R
D000595:Amino Acid Sequence; D000818:Animals; D015139:Blotting, Southern; D002816:Chordata, Nonvertebrate / Q000235:genetics*; D004247:DNA / Q000032:analysis / Q000235:genetics; D004251:DNA Transposable Elements / Q000235:genetics*; D004587:Electrophoresis, Agar Gel; D008969:Molecular Sequence Data; D016254:Mutagenesis, Insertional / Q000235:genetics; D017386:Sequence Homology, Amino Acid; D013045:Species Specificity
D004251:DNA Transposable Elements; D004247:DNA