Data mining and computationally intensive methods: summary of Group 7 contributions to Genetic Analysis Workshop 13.
The Framingham Heart Study data, as well as a related simulated data set, were generously provided to the participants of the Genetic Analysis Workshop 13 in order that newly developed and emerging statistical methodologies could be tested on that well-characterized data set. The impetus driving the development of novel methods is to elucidate the contributions of genes, environment, and interactions between and among them, as well as to allow comparison between and validation of methods. The seven papers that comprise this group used data-mining methodologies (tree-based methods, neural networks, discriminant analysis, and Bayesian variable selection) in an attempt to identify the underlying genetics of cardiovascular disease and related traits in the presence of environmental and genetic covariates. Data-mining strategies are gaining popularity because they are extremely flexible and may have greater efficiency and potential in identifying the factors involved in complex disorders. While the methods grouped together here constitute a diverse collection, some papers asked similar questions with very different methods, while others used the same underlying methodology to ask very different questions. This paper briefly describes the data-mining methodologies applied to the Genetic Analysis Workshop 13 data sets and the results of those investigations.
Costello
Tracy J
TJ
Department of Epidemiology, University of Texas M.D. Anderson Cancer Center, Houston, USA.
Falk
Catherine T
CT
Ye
Kenny Q
KQ
D001499:Bayes Theorem; D002318:Cardiovascular Diseases / Q000453:epidemiology* / Q000235:genetics*; D016002:Discriminant Analysis; D008040:Genetic Linkage; D020022:Genetic Predisposition to Disease; D006801:Humans; D008432:Mathematical Computing; D024821:Metabolic Syndrome / Q000453:epidemiology / Q000235:genetics; D008957:Models, Genetic; D015233:Models, Statistical; D016571:Neural Networks, Computer; D012307:Risk Factors