Structure of sphingomyelin bilayers: a simulation study.
We have carried out a molecular dynamics simulation of a hydrated 18:0 sphingomyelin lipid bilayer. The bilayer contained 1600 sphingomyelin (SM) molecules, and 50,592 water molecules. After construction and initial equilibration, the simulation was run for 3.8 ns at a constant temperature of 50 degrees C and a constant pressure of 1 atm. We present properties of the bilayer calculated from the simulation, and compare with experimental data and with properties of dipalmitoyl phosphatidylcholine (DPPC) bilayers. The SM bilayers are significantly more ordered and compact than DPPC bilayers at the same temperature. SM bilayers also exhibit significant intramolecular hydrogen bonding between phosphate ester oxygen and hydroxyl hydrogen atoms. This results in a decreased hydration in the polar region of the SM bilayer compared with DPPC. Since our simulation system is very large we have calculated the power spectrum of bilayer undulation and peristaltic modes, and we compare these data with similar calculations for DPPC bilayers. We find that the SM bilayer has significantly larger bending modulus and area compressibility compared to DPPC.
Chiu
S W
SW
Department of Molecular and Integrative Physiology, Department of Biochemistry, University of Illinois at Urbana-Champaign Programs in Biophysics, Neuroscience, and Bioengineering, and Beckman Institute, University of Illinois, Urbana, Illinois, USA.
Vasudevan
S
S
Jakobsson
Eric
E
Mashl
R Jay
RJ
Scott
H Larry
HL
D015060:1,2-Dipalmitoylphosphatidylcholine / Q000737:chemistry; D001703:Biophysics / Q000379:methods*; D003198:Computer Simulation; D004583:Electrons; D006838:Hydrocarbons / Q000737:chemistry; D006859:Hydrogen; D006860:Hydrogen Bonding; D007700:Kinetics; D008051:Lipid Bilayers / Q000737:chemistry*; D021962:Membrane Microdomains; D008956:Models, Chemical; D008958:Models, Molecular; D008962:Models, Theoretical; D011312:Pressure; D011487:Protein Conformation; D012984:Software; D013109:Sphingomyelins / Q000737:chemistry*; D013696:Temperature; D014867:Water / Q000737:chemistry
D006838:Hydrocarbons; D008051:Lipid Bilayers; D013109:Sphingomyelins; D014867:Water; D015060:1,2-Dipalmitoylphosphatidylcholine; D006859:Hydrogen