title: Residues in the distal heme pocket of neuroglobin. Implications for the multiple ligand binding steps.
abstract: Amino acid residues in the ligand binding pocket of human neuroglobin have been identified by site-directed mutagenesis and their properties investigated by resonance Raman and flash photolysis methods. Wild-type neuroglobin has been shown to have six-coordinate heme in both ferric and ferrous states. Substitution of His96 by alanine leads to complete loss of heme, indicating that His96 is the proximal ligand. The resonance Raman spectra of M69L and K67T mutants were similar to those of wild-type (WT) neuroglobin in both ferric and ferrous states. By contrast, H64V was six-coordinate high-spin and five-coordinate high-spin in the ferric and ferrous states, respectively, at acidic pH. The spectra were pH-dependent and six-coordinate with the low-spin component dominating at alkaline pH. In a double mutant H64V/K67T, the high-spin component alone was detected in the both ferric and the ferrous states. This implies that His64 is the endogenous ligand and that Lys67 is situated nearby in the distal pocket. In the ferrous H64V and H64V/K67T mutants, the nu(Fe-His) stretching frequency appears at 221 cm(-1), which is similar to that of deoxymyoglobin. In the ferrous CO-bound state, the nu(Fe-CO) stretching frequency was detected at 521 and 494 cm(-1) in WT, M69L, and K67T, while only the 494 cm(-1) component was detected in the H64V and H64V/K67T mutants. Thus, the 521 cm(-1) component is attributed to the presence of polar His64. The CO binding kinetics were biphasic for WT, H64V, and K67T and monophasic for H64V/K67T. Thus, His64 and Lys67 comprise a unique distal heme pocket in neuroglobin.
authors.affiliation: Graduate School of Pharmaceutical Sciences, Kumamoto University, Oehonmachi, Kumamoto 862-0973, Japan. unot@gpo.kumamoto-u.ac.jp
authors.forename: Tadayuki
authors.initials: T
authors.lastname: Uno
authors.forename: Daisuke
authors.initials: D
authors.lastname: Ryu
authors.forename: Hiroko
authors.initials: H
authors.lastname: Tsutsumi
authors.forename: Yoshikazu
authors.initials: Y
authors.lastname: Tomisugi
authors.forename: Yoshinobu
authors.initials: Y
authors.lastname: Ishikawa
authors.forename: Anthony J
authors.initials: AJ
authors.lastname: Wilkinson
authors.forename: Hideaki
authors.initials: H
authors.lastname: Sato
authors.forename: Takashi
authors.initials: T
authors.lastname: Hayashi
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D001665:Binding Sites; D002248:Carbon Monoxide; D003001:Cloning, Molecular; D004247:DNA / Q000737:chemistry; D004591:Electrophoresis, Polyacrylamide Gel; D005914:Globins / Q000737:chemistry*; D006418:Heme / Q000737:chemistry*; D006639:Histidine / Q000737:chemistry; D006801:Humans; D006863:Hydrogen-Ion Concentration; D007700:Kinetics; D008024:Ligands; D008239:Lysine / Q000737:chemistry; D008956:Models, Chemical; D008969:Molecular Sequence Data; D009154:Mutation; D009211:Myoglobin / Q000031:analogs & derivatives* / Q000737:chemistry; D009419:Nerve Tissue Proteins / Q000737:chemistry*; D000078787:Neuroglobin; D011485:Protein Binding; D017434:Protein Structure, Tertiary; D017386:Sequence Homology, Amino Acid; D013053:Spectrophotometry; D013059:Spectrum Analysis, Raman; D013997:Time Factors
chemical_list: D008024:Ligands; D009211:Myoglobin; D009419:Nerve Tissue Proteins; D000078787:Neuroglobin; C055547:deoxymyoglobin; D006418:Heme; D006639:Histidine; D002248:Carbon Monoxide; D005914:Globins; D004247:DNA; D008239:Lysine