Numerical characterization and similarity analysis of DNA sequences based on 2-D graphical representation of the characteristic sequences.
Based on the classifications of the four nucleic acid bases, He and Wang reduced a DNA sequence to three binary sequences, which are called the characteristic sequences (J. Chem. Inf. Comput. Sci. 42 (2002) 1080). In this paper, we associate each characteristic sequence with a (b)L / (b)L matrix by giving a 2-D 'two horizontal lines' graphical representation, and thus obtain a 3-component vector with entries being the sums of the maximal and minimal eigenvalues of the (b)L / (b)L matrices. The introduced vector results in more simple characterizations and comparisons among the coding sequences of exon 1 of beta-globin gene of eleven different species.
Li
Chun
C
Department of Applied Mathematics, Dalian University of Technology, Dalian 116024, PR China. lchlmb@yahoo.com.cn
Wang
Jun
J
D000818:Animals; D001483:Base Sequence; D004247:DNA / Q000737:chemistry*; D005914:Globins / Q000235:genetics; D006801:Humans; D008969:Molecular Sequence Data; D017422:Sequence Analysis, DNA / Q000379:methods*; D012689:Sequence Homology, Nucleic Acid; D013223:Statistics as Topic / Q000379:methods
D005914:Globins; D004247:DNA