title: Dependence of plastoquinol diffusion on the shape, size, and density of integral thylakoid proteins.
abstract: The diffusion of plastoquinol in the chloroplast thylakoid membrane is modelled using Monte Carlo techniques. The integral proteins are seen as obstacles to diffusion, and features of percolation theory emerge. Thus, the diffusion coefficient diminishes with increasing distance and there is a critical threshold of protein concentration, above which the long-range diffusion coefficient is zero. The area occupied by proteins in vivo is assessed and appears to be around this threshold, as determined from calculations assuming randomly distributed noninteracting proteins. Slight changes in the protein arrangement lead to pronounced changes in diffusion behaviour under such conditions. Mobility of the proteins increases the protein occupancy threshold, while boundary lipids impermeable to PQ diffusion decrease it. Further, the obstruction of plastoquinone/plastoquinol binding sites in a random arrangement is evaluated.
authors.affiliation: Environmental Biology Group, Research School of Biological Sciences, Australian National University, Canberra, A.C.T. 2601, Australia. ira@tremmel.net
authors.forename: I G
authors.initials: IG
authors.lastname: Tremmel
authors.forename: H
authors.initials: H
authors.lastname: Kirchhoff
authors.forename: E
authors.initials: E
authors.lastname: Weis
authors.forename: G D
authors.initials: GD
authors.lastname: Farquhar
mesh_terms: D001665:Binding Sites; D003198:Computer Simulation; D003627:Data Interpretation, Statistical; D004058:Diffusion; D007700:Kinetics; D008954:Models, Biological; D009010:Monte Carlo Method; D045332:Photosystem II Protein Complex / Q000378:metabolism*; D010971:Plastoquinone / Q000031:analogs & derivatives* / Q000378:metabolism*; D020524:Thylakoids / Q000378:metabolism*
chemical_list: D045332:Photosystem II Protein Complex; C003165:plastoquinol; D010971:Plastoquinone