title: Distal heme pocket conformers of carbonmonoxy derivatives of Ascaris hemoglobin: evidence of conformational trapping in porous sol-gel matrices.
abstract: We report the ligand dependence of the conformer distribution in the distal heme pocket of Ascaris suum hemoglobin (Hb) studied by resonance Raman spectroscopy. The heme-bound CO is used as a spectroscopic antenna to probe the original distribution of conformers in the dioxygen derivative of Ascaris Hb, by utilizing sol-gel encapsulation. The first step is to encapsulate the dioxygen derivative in the porous sol-gel and let the gel age, thus trapping the equilibrium conformational distribution of Ascaris dioxygen Hb. In the second step, the dioxygen ligand is replaced by CO. The sol-gel environment impedes any large scale movements, drastically slowing down the conformational relaxation triggered by the ligation change, essentially "locking in" the initial quaternary and even tertiary structure of the protein. Studying the Fe-CO frequencies of the latter sample allows evaluation of the distribution of the distal heme pocket conformers that was originally associated with the dioxygen derivative. Extending the study to the Ascaris mutants allows for examination of the effect of specific residues in the distal pocket on the conformational distribution. The choice of mutants was largely based on the anticipated variation in hydrogen bonding patterns. The results show that the sol-gel encapsulation can slow or prevent re-equilibration within the distal heme pocket of Ascaris Hb and that the distribution of distal heme pocket conformers for the CO derivative of Ascaris Hb in the sol-gel is highly dependent on the history of the sample. Additionally, we report a detailed study of the CO complex of the mutants in solution for assignment of the various heme pocket conformers, and we present a comparison of the sol-gel data with solution data. The results support a picture in which the dioxygen derivative biases the population strongly toward a tightly packed configuration that favors the network of strong hydrogen bonding interactions, and suggest that Ascaris Hb is uniquely designed for dioxygen capture.
authors.affiliation: Pfize Global Research and Development, Chesterfield, Missouri 63017, USA.
authors.forename: Tapan K
authors.initials: TK
authors.lastname: Das
authors.forename: Uri
authors.initials: U
authors.lastname: Samuni
authors.forename: Yu
authors.initials: Y
authors.lastname: Lin
authors.forename: Daniel E
authors.initials: DE
authors.lastname: Goldberg
authors.forename: Denis L
authors.initials: DL
authors.lastname: Rousseau
authors.forename: Joel M
authors.initials: JM
authors.lastname: Friedman
mesh_terms: D000818:Animals; D001200:Ascaris / Q000378:metabolism*; D001665:Binding Sites; D002248:Carbon Monoxide / Q000737:chemistry*; D031541:Fluorescence Resonance Energy Transfer; D006418:Heme / Q000737:chemistry*; D006454:Hemoglobins / Q000737:chemistry*; D006859:Hydrogen / Q000737:chemistry; D006860:Hydrogen Bonding; D008024:Ligands; D008956:Models, Chemical; D008958:Models, Molecular; D009154:Mutation; D011487:Protein Conformation; D013053:Spectrophotometry; D013059:Spectrum Analysis, Raman
chemical_list: D006454:Hemoglobins; D008024:Ligands; D006418:Heme; D002248:Carbon Monoxide; D006859:Hydrogen