gff2aplot: Plotting sequence comparisons.
CONCLUSIONS
gff2aplot is a program to visualize the alignment of two sequences together with their annotations. Input for the program consists of single or multiple files in GFF-format which specify the alignment coordinates and annotation features of both sequences. Output is in PostScript format of any size. The features to be displayed are highly customizable to meet user specific needs. The program serves to generate print-quality images for comparative genome sequence analysis.


BACKGROUND
gff2aplot is freely available under the GNU software licence and can be downloaded from the address specified below.


BACKGROUND
http://genome.imim.es/software/gfftools/GFF2APLOT.html
Abril
Josep F
JF
Grup de Recerca en Informàtica Biomèdica, Institut Municipal d'Investigació Mèdica, Universitat Pompeu Fabra -Centre de Regulació Genòmica, Passeig Marítim de la Barceloneta 37-49, 08003 Barcelona, Catalonia, Spain. jabril@imim.es
Guigó
Roderic
R
Wiehe
Thomas
T
D000818:Animals; D003196:Computer Graphics; D003628:Database Management Systems; D005802:Genes, MHC Class II / Q000235:genetics; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods*; D051379:Mice; D016415:Sequence Alignment / Q000379:methods*; D017421:Sequence Analysis / Q000379:methods*; D012984:Software; D014584:User-Computer Interface