title: PRIMEX: rapid identification of oligonucleotide matches in whole genomes.
abstract: CONCLUSIONS
  PRIMEX (PRImer Match EXtractor) can detect oligonucleotide sequences in whole genomes, allowing for mismatches. Using a word lookup table and server functionality, PRIMEX accepts queries from client software and returns matches rapidly. We find it faster and more sensitive than currently available tools.
  
  
  BACKGROUND
  Running applications and source code have been made available at http://bioinformatics.cribi.unipd.it/primex
authors.affiliation: Laboratory of Functional Genomics and Proteomics, Masaryk University Brno, Kotlarska 2, 61137 Brno, Czech Republic. m-lexa@sci.muni.cz
authors.forename: Matej
authors.initials: M
authors.lastname: Lexa
authors.forename: Giorgio
authors.initials: G
authors.lastname: Valle
mesh_terms: D000465:Algorithms; D016678:Genome; D009841:Oligonucleotides / Q000235:genetics*; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D014584:User-Computer Interface
chemical_list: D009841:Oligonucleotides