title: Domainal organization of the lower eukaryotic homologs of the yeast RNA polymerase II core subunit Rpb7 reflects functional conservation.
abstract: The subcomplex of Rpb4 and Rpb7 subunits of RNA pol II in Saccharomyces cerevisiae is known to be an important determinant of transcription under a variety of physiological stresses. In S.cerevisiae, RPB7 is essential for cell viability while rpb4 null strains are temperature sensitive at low and high temperatures. The rpb4 null strain also shows defect in sporulation and a predisposed state of pseudohyphal growth. We show here that, apart from S.cerevisiae Rpb7, the Rpb7 homologs from other lower eukaryotes like Schizosaccharomyces pombe, Candida albicans and Dictyostelium discoideum can complement for the absence of S.cerevisiae RPB7. This is the first report where we have shown that both the C.albicans and D.discoideum homologs are functional orthologs of the yeast RPB7. We also show that high expression levels of S.cerevisiae RPB7 and its homologs rescue the sporulation defect of rpb4 homozygous null diploids, but only some of them cause significant enhancement of the pseudohyphal phenotype. Structural modeling of Rpb7 and its homologs show a high degree of conservation in the overall structure. This study indicates a structural and functional conservation of different Rpb7 across species and also a conserved role of Rpb7 in the subcomplex with respect to nutritional stress.
authors.affiliation: Department of Microbiology, Indian Institute of Science, Bangalore-12, India.
authors.forename: Sunanda R
authors.initials: SR
authors.lastname: Singh
authors.forename: Nambudiry
authors.initials: N
authors.lastname: Rekha
authors.forename: Beena
authors.initials: B
authors.lastname: Pillai
authors.forename: Vijender
authors.initials: V
authors.lastname: Singh
authors.forename: Aruna
authors.initials: A
authors.lastname: Naorem
authors.forename: Vinaya
authors.initials: V
authors.lastname: Sampath
authors.forename: N
authors.initials: N
authors.lastname: Srinivasan
authors.forename: Parag P
authors.initials: PP
authors.lastname: Sadhale
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D002176:Candida albicans / Q000201:enzymology* / Q000235:genetics; D017124:Conserved Sequence; D004023:Dictyostelium / Q000201:enzymology* / Q000235:genetics; D019143:Evolution, Molecular; D017353:Gene Deletion; D005816:Genetic Complementation Test; D017017:Methanococcus / Q000201:enzymology; D008958:Models, Molecular; D008969:Molecular Sequence Data; D010641:Phenotype; D017434:Protein Structure, Tertiary; D012319:RNA Polymerase II / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D011993:Recombinant Fusion Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D012441:Saccharomyces cerevisiae / Q000201:enzymology* / Q000235:genetics; D029701:Saccharomyces cerevisiae Proteins / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D012568:Schizosaccharomyces / Q000201:enzymology* / Q000235:genetics; D016415:Sequence Alignment
chemical_list: D011993:Recombinant Fusion Proteins; D029701:Saccharomyces cerevisiae Proteins; D012319:RNA Polymerase II; C470553:RPB7 protein, S cerevisiae