title: Cell type-specific methylation of an intronic CpG island controls expression of the MCJ gene.
abstract: Over 50% of human genes are associated with CpG islands and DNA methylation within such CpG islands has been clearly correlated with inhibition of expression. Whereas changes in DNA methylation play a key role in a number of human diseases, in particular cancer, in normal DNA CpG islands are nearly always methylation free, regardless of the expression status of the associated gene. Only limited evidence supports a role for DNA methylation in controlling tissue-specific expression in adult somatic tissue. Loss of expression of the MCJ gene has previously been linked to increased chemotherapeutic drug resistance in ovarian cancer. We report that loss of expression of MCJ in drug-resistant ovarian cancer cell lines depends on methylation of a CpG island within its first exon, but is independent of methylation within the promoter region. Furthermore, cell type-specific expression of the MCJ gene in normal cells also depends on the methylation status of the CpG island within its first exon. The MCJ CpG island is methylated and the gene is not expressed in cells of epithelial origin, but unmethylated and expressed in cells of lymphocyte or fibroblast origin. Chromatin immunoprecipitation assays determined that MCJ CpG island methylation was associated with loss of histone acetylation in ovarian epithelial cells compared with unmethylated fibroblast cells. Reduced acetylation was observed not only within the CpG island, but also within the promoter region, suggesting that CpG island methylation may direct alterations in chromatin structure within the promoter region, leading to gene inactivation.
authors.affiliation: Department of Medical Oncology, Cancer Research UK Beatson Laboratories, Glasgow University, Glasgow G61 1BD, Scotland, UK. g.strathdee@beatson.gla.ac.uk
authors.forename: G
authors.initials: G
authors.lastname: Strathdee
authors.forename: B R
authors.initials: BR
authors.lastname: Davies
authors.forename: J K
authors.initials: JK
authors.lastname: Vass
authors.forename: N
authors.initials: N
authors.lastname: Siddiqui
authors.forename: R
authors.initials: R
authors.lastname: Brown
mesh_terms: D000107:Acetylation; D000970:Antineoplastic Agents / Q000494:pharmacology; D001483:Base Sequence; D002843:Chromatin / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D002945:Cisplatin / Q000494:pharmacology; D018899:CpG Islands; D019175:DNA Methylation; D019008:Drug Resistance, Neoplasm; D004847:Epithelial Cells; D005260:Female; D005347:Fibroblasts; D015972:Gene Expression Regulation, Neoplastic; D050956:HSP40 Heat-Shock Proteins; D006360:Heat-Shock Proteins / Q000235:genetics*; D006655:Histone Deacetylases; D006657:Histones / Q000737:chemistry / Q000378:metabolism; D006801:Humans; D007438:Introns / Q000235:genetics*; D008214:Lymphocytes; D008969:Molecular Sequence Data; D010051:Ovarian Neoplasms / Q000235:genetics* / Q000473:pathology; D010053:Ovary / Q000502:physiology; D011233:Precipitin Tests; D011401:Promoter Regions, Genetic / Q000235:genetics; D020133:Reverse Transcriptase Polymerase Chain Reaction
chemical_list: D000970:Antineoplastic Agents; D002843:Chromatin; D050956:HSP40 Heat-Shock Proteins; D006360:Heat-Shock Proteins; D006657:Histones; D006655:Histone Deacetylases; D002945:Cisplatin