A graphical tool for parasite genome annotation.
A graphical tool to facilitate rapid primary annotation of genomic sequence has been developed. Within a single interface the user can import sequences or database entries, run feature prediction programs and similarity searches, filter results, add additional manually found features and notes, and finally export annotations for database submission. Integrated rule-based feature corroboration and a novel decision support heuristic using ORF orientation, length and base-composition further enhances the efficiency of the annotation process without compromising flexibility. The program has been explicitly tailored to use in protozoan parasite genome projects, but can constitute a useful tool for prokaryote annotation as well. It is successfully being used by our lab in the Trypanosoma cruzi genome project, and can be obtained from the authors upon request.
Nilsson
Daniel
D
Center for Genomics and Bioinformatics, Karolinska Institutet, S-17177 Stockholm, Sweden.
Andersson
Björn
B
D000818:Animals; D003196:Computer Graphics; D003661:Decision Support Techniques; D018503:Genome, Protozoan; D016366:Open Reading Frames; D014349:Trypanosoma cruzi / Q000235:genetics*; D014584:User-Computer Interface