title: Energy migration in novel pH-triggered self-assembled beta-sheet ribbons.
abstract: Energy migration between tryptophan residues has been experimentally demonstrated in self-assembled peptide tapes. Each peptide contains 11 amino acids with a Trp at position 6. The peptide self-assembly is pH-sensitive and forms amphiphilic tapes, which further stack in ribbons (double tapes) and fibrils in water depending on the concentration. Fluorescence spectra, quenching, and anisotropy experiments showed that when the pH is lowered from 9 to 2, the peptide self-assembly buries the tryptophan in a hydrophobic and restricted environment in the interior of stable ribbons as expected on the basis of the peptide design. These fluorescence data support directly and for the first time the presence of such ribbons which are characterized by a highly packed and stable hydrophobic interior. In common with Trp in many proteins, fluorescence lifetimes are nonexponential, but the average lifetime is shorter at low pH, possibly due to quenching with neighboring Phe residues. Unexpectedly, time-resolved fluorescence anisotropy does not change significantly with self-assembly when in water. In highly viscous sucrose-water mixtures, the anisotropy decay at low pH was largely unchanged compared to that in water, whereas at high pH, the anisotropy decay increased significantly. We concluded that depolarization at low pH was not due to rotational diffusion but mainly due to energy migration between adjacent tryptophan residues. This was supported by a master equation kinetic model of Trp-Trp energy migration, which showed that the simulated and experimental results are in good agreement, although on average only three Trp residues were visited before emission.
authors.affiliation: Department of Chemistry and Centre for Chemical Dynamics, University of Leeds, Leeds, LS2 9JT, UK.
authors.forename: Veysel
authors.initials: V
authors.lastname: Kayser
authors.forename: David A
authors.initials: DA
authors.lastname: Turton
authors.forename: Amalia
authors.initials: A
authors.lastname: Aggeli
authors.forename: Andrew
authors.initials: A
authors.lastname: Beevers
authors.forename: Gavin D
authors.initials: GD
authors.lastname: Reid
authors.forename: Godfrey S
authors.initials: GS
authors.lastname: Beddard
mesh_terms: D003198:Computer Simulation; D005454:Fluorescence Polarization; D006863:Hydrogen-Ion Concentration; D008958:Models, Molecular; D009842:Oligopeptides / Q000737:chemistry*; D017433:Protein Structure, Secondary; D013816:Thermodynamics; D014364:Tryptophan / Q000737:chemistry*
chemical_list: D009842:Oligopeptides; D014364:Tryptophan