Toward a computational description of nitrile hydratase: studies of the ground state bonding and spin-dependent energetics of mononuclear, non-heme Fe(III) complexes.
The metal coordination and spin state of the Fe(III) center in nitrile hydratase (NHase) has stimulated the synthesis of model complexes in efforts to understand the reactivity and spectroscopic properties of the enzyme. We report density functional theory (DFT) calculations on a number of Fe(III) complexes that have been prepared as models of the NHase metal center, together with others having similar ligands but different ground state spin multiplicities. Our results suggest that a DFT description of specific spin configurations in these systems does not suffer from significant amounts of spin contamination. In particular, B3LYP calculations not only reproduce the observed spin state preferences of these Fe(III) complexes but also predict spin-dependent structural properties consistent with those expected on the basis of ligand field models. An analysis of the natural bond orbital (NBO) transformation of the Kohn-Sham wave functions has enabled quantitation of the overall contribution to covalency of ligand-to-metal sigma-donation and pi-donation, and metal-to-ligand pi-back-bonding in these Fe(III) complexes at their BLYP-optimized geometries. Although sulfur ligands are the primary source of covalency in the Fe(III) complexes, our quantitative analysis suggests that hyperbonding between metal-bound nitrogens and an Fe-S bond represents a mechanism by which Fe-N covalency may arise. These studies establish the computational methodology for future theoretical investigations of the NHase Fe(III) center.
Chang
Christopher H
CH
Department of Chemistry, University of Florida, Gainesville, Florida 32611-7200, USA.
Boone
Amy J
AJ
Bartlett
Rodney J
RJ
Richards
Nigel G J
NG
D055598:Chemical Phenomena; D002627:Chemistry, Physical; D019295:Computational Biology; D018360:Crystallography, X-Ray; D006836:Hydro-Lyases / Q000737:chemistry*; D006860:Hydrogen Bonding; D008958:Models, Molecular; D019159:Nonheme Iron Proteins / Q000737:chemistry*
D019159:Nonheme Iron Proteins; D006836:Hydro-Lyases; C048831:nitrile hydratase