AnaGram: protein function assignment.
CONCLUSIONS
AnaGram is a web service for protein function assignment based on identity detection of small significant fragments (protomotifs) that can act as modular pieces in peptide construction. The system is able to assign function by finding correlations between protomotifs and functional annotations contained in SWISS-PROT and Medline databases. In addition, function ontologies are used for hierarchical organization of the predicted functions. Extensive tests have been carried out to evaluate the accuracy and performance of the system.


BACKGROUND
http://jaguar.genetica.uma.es/anagram.htm
Pérez
A J
AJ
Genetics Department and Computer Architecture Department, University of Málaga, 29071 Málaga, Spain. antoniojperez@uma.es
Thode
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Trelles
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D000465:Algorithms; D020816:Amino Acid Motifs; D004282:Documentation; D016247:Information Storage and Retrieval / Q000379:methods*; D020407:Internet; D016239:MEDLINE; D009323:Natural Language Processing; D010506:Periodicals as Topic; D011506:Proteins / Q000737:chemistry* / Q000145:classification / Q000235:genetics / Q000378:metabolism*; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software; D013329:Structure-Activity Relationship; D014584:User-Computer Interface
D011506:Proteins