title: Effect of matrix chain length on the electrophoretic mobility of large linear and branched DNA in polymer solutions.
abstract: We study the effect of matrix chain molecular weight Mw and concentration c on the electrophoretic mobility micro of large linear and star-like, branched DNA in polymer solutions. Polyethylene oxide (PEO) with narrow molecular weight distributions form the main focus of this study. For PEO concentrations ranging from one half the overlap concentration, c*, to 3c*, the effective drag coefficient, zeta is identical with (mu0/mu) - 1, satisfies the following approximate scaling relationship, zeta approximately cMw(0.7). Here, mu0 is the electrophoretic mobility in free solution. While the concentration dependence is consistent with predictions from the transient entanglement coupling (TEC) model, the molecular weight dependence is significantly weaker. Although a similar dependence of mobility on Mw can be predicted when nonentangling collisions are the dominant source of drag, a model based on these collisions alone cannot reproduce the experimental observations. We also find that the architecture of large DNA does not affect either the concentration dependence or molecular weight dependence of the electrophoretic mobility.
authors.affiliation: School of Chemical and Biomolecular Engineering, Cornell University, Ithaca, NY 14853, USA.
authors.forename: Sourav
authors.initials: S
authors.lastname: Saha
authors.forename: Daniel M
authors.initials: DM
authors.lastname: Heuer
authors.forename: Lynden A
authors.initials: LA
authors.lastname: Archer
mesh_terms: D004247:DNA / Q000737:chemistry* / Q000302:isolation & purification*; D019075:Electrophoresis, Capillary / Q000379:methods*; D008962:Models, Theoretical; D008970:Molecular Weight; D009690:Nucleic Acid Conformation; D011092:Polyethylene Glycols; D011108:Polymers; D012996:Solutions
chemical_list: D011108:Polymers; D012996:Solutions; D011092:Polyethylene Glycols; D004247:DNA