title: Molecular dynamics simulations of a guaiacyl beta-O-4 lignin model compound: examination of intramolecular hydrogen bonding and conformational flexibility.
abstract: The dynamical conformational behavior of a guaiacyl beta-O-4 lignin model compound has been investigated by molecular simulations. The potential energy surface of the molecule in vacuum has been examined by means of an adiabatic map, showing a large accessible conformational space with multiple energy minima separated by low barriers. Molecular dynamics simulations have been performed in vacuum and with explicit solvent molecules for 10 and 2.1 ns, respectively. Molecular dynamics trajectories recorded in vacuum have shown the molecule to be flexible and to visit a large number of conformations. Many intramolecular H-bonds have been observed, existing for more than 90% of the total simulation time. The presence of explicit solvent molecules induces a significant broadening of some regions of the accessible conformational space and also largely reduces the statistical significance of intramolecular H-bonding. Intramolecular H-bonds observed in vacuum do not persist significantly and are preferentially exchanged with intermolecular H-bonds to the surrounding solvent molecules. The theoretical results are in good agreement with experimental NMR data that do not support the existence of strong and persistent intramolecular H-bonds in solution but instead indicate that H-bonds to solvent predominate. Finally, both molecular modeling and NMR approaches predict the guaiacyl beta-O-4 structure to be flexible and indicate that intramolecular H-bonds are not strong and persistent enough to confer rigidity to the molecule in solution.
authors.affiliation: Centre de Recherches sur les Macromolécules Végétales, CERMAV-CNRS (associated with University Joseph Fourier), BP 53, 38041 Grenoble Cedex 9, France.
authors.forename: Stéphane
authors.initials: S
authors.lastname: Besombes
authors.forename: Karim
authors.initials: K
authors.lastname: Mazeau
mesh_terms: D006139:Guaiacol / Q000031:analogs & derivatives* / Q000737:chemistry; D006860:Hydrogen Bonding; D008031:Lignin / Q000031:analogs & derivatives* / Q000737:chemistry; D009682:Magnetic Resonance Spectroscopy; D008958:Models, Molecular; D008968:Molecular Conformation; D012997:Solvents; D013816:Thermodynamics; D014618:Vacuum
chemical_list: D012997:Solvents; D006139:Guaiacol; D008031:Lignin