Behavior of complex knots in single DNA molecules.
We used optical tweezers to tie individual DNA molecules in knots. Although these knots become highly localized under tension, they remain surprisingly mobile and undergo thermal diffusion with classical random walk statistics. The diffusion constants of knots with different complexities correlate with theoretical calculations of knot sizes. We show that this correlation can be explained by a simple hydrodynamical model of "self-reptation" of the knot along a polymer.
Bao
Xiaoyan R
XR
Department of Applied Physics, California Institute of Technology, Pasadena, California 91125, USA.
Lee
Heun Jin
HJ
Quake
Stephen R
SR
D010582:Bacteriophage lambda / Q000737:chemistry / Q000235:genetics; D001710:Biotin / Q000737:chemistry; D011088:DNA Ligases / Q000737:chemistry; D004279:DNA, Viral / Q000737:chemistry*; D004548:Elasticity; D009690:Nucleic Acid Conformation
D004279:DNA, Viral; D001710:Biotin; D011088:DNA Ligases