title: The impact of thymic antigen diversity on the size of the selected T cell repertoire.
abstract: The TCR repertoire of a normal animal is shaped in the thymus by ligand-specific positive- and negative-selection events. These processes are believed to be determined at the single-cell level primarily by the affinity of the TCR-ligand interactions. The relationships among all the variables involved are still unknown due to the complexity of the interactions and the lack of quantitative analysis of those parameters. In this study, we developed a quantitative model of thymic selection that provides estimates of the fractions of positively and negatively selected thymocytes in the cortex and in the medulla, as well as upper-bound ranges for the number of selecting ligands required for the generation of a normal diverse TCR repertoire. Fitting the model to current estimates of positive- and negative-selected thymocytes leads to specific predictions. The results indicate the following: 1) the bulk of thymocyte death takes place in the cortex, and it is due to neglect; 2) the probability of a thymocyte to be negatively selected in the cortex is at least 10-fold lower than in the medulla; 3) <60 ligands are involved in cortical positive selection; and 4) negative selection in the medulla is constrained by a large diversity of selecting ligands on medullary APCs.
authors.affiliation: Departamento de Física Aplicada, Universidad de Salamanca, Salamanca, Spain. jfaro@igc.gulbenkian.pt
authors.forename: Jose
authors.initials: J
authors.lastname: Faro
authors.forename: Santiago
authors.initials: S
authors.lastname: Velasco
authors.forename: Africa
authors.initials: A
authors.lastname: González-Fernández
authors.forename: Antonio
authors.initials: A
authors.lastname: Bandeira
mesh_terms: D000818:Animals; D000938:Antigen-Presenting Cells / Q000276:immunology / Q000378:metabolism; D002454:Cell Differentiation / Q000276:immunology; D002470:Cell Survival / Q000276:immunology; D019295:Computational Biology / Q000379:methods / Q000706:statistics & numerical data; D004847:Epithelial Cells / Q000276:immunology / Q000378:metabolism; D007519:Isoantigens / Q000502:physiology*; D018655:Lymphocyte Count; D051379:Mice; D008822:Mice, Transgenic; D018448:Models, Immunological; D010455:Peptides / Q000276:immunology / Q000378:metabolism; D011336:Probability; D011948:Receptors, Antigen, T-Cell / Q000378:metabolism; D015398:Signal Transduction / Q000276:immunology; D016176:T-Lymphocyte Subsets / Q000166:cytology* / Q000276:immunology* / Q000378:metabolism; D013950:Thymus Gland / Q000166:cytology* / Q000276:immunology* / Q000378:metabolism
chemical_list: D007519:Isoantigens; D010455:Peptides; D011948:Receptors, Antigen, T-Cell