Pseudomonas syringae pv. phaseolicola can be separated into two genetic lineages distinguished by the possession of the phaseolotoxin biosynthetic cluster.
The bean (Phaseolus spp.) plant pathogen Pseudomonas syringae pv. phaseolicola is characterized by the ability to produce phaseolotoxin (Tox(+)). We recently reported that the majority of the Spanish P. syringae pv. phaseolicola population is unable to synthesize this toxin (Tox(-)). These Tox(-) isolates appear to lack the entire DNA region for the biosynthesis of phaseolotoxin (argK-tox gene cluster), as shown by PCR amplification and DNA hybridization using DNA sequences specific for separated genes of this cluster. Tox(+) and Tox(-) isolates also showed genomic divergence that included differences in ERIC-PCR and arbitrarily primed-PCR profiles. Tox(+) isolates showed distinct patterns of IS801 genomic insertions and contained a chromosomal IS801 insertion that was absent from Tox(-) isolates. Using a heteroduplex mobility assay, sequence differences were observed only among the intergenic transcribed spacer of the five rDNA operons of the Tox(-) isolates. The techniques used allowed the unequivocal differentiation of isolates of P. syringae pv. phaseolicola from the closely related soybean (Glycine max) pathogen, P. syringae pv. glycinea. Finally, a pathogenicity island that is essential for the pathogenicity of P. syringae pv. phaseolicola on beans appears to be conserved among Tox(+), but not among Tox(-) isolates, which also lacked the characteristic large plasmid that carries this pathogenicity island. It is proposed that the results presented here justify the separation of the Tox(+) and Tox(-) P. syringae pv. phaseolicola isolates into two distinct genetic lineages, designated Pph1 and Pph2, respectively, that show relevant genomic differences that include the pathogenicity gene complement.
Oguiza
José A
JA
Instituto de Agrobiotecnología y Recursos Naturales, CSIC-UPNA, and Laboratorio de Patología Vegetal, Departamento de Producción Agraria, Universidad Pública de Navarra, 31006 Pamplona, Spain.
Rico
Arantza
A
Instituto de Agrobiotecnología y Recursos Naturales, CSIC-UPNA, and Laboratorio de Patología Vegetal, Departamento de Producción Agraria, Universidad Pública de Navarra, 31006 Pamplona, Spain.
Rivas
Luis A
LA
Instituto de Agrobiotecnología y Recursos Naturales, CSIC-UPNA, and Laboratorio de Patología Vegetal, Departamento de Producción Agraria, Universidad Pública de Navarra, 31006 Pamplona, Spain.
Sutra
Laurent
L
UMR de Pathologie Végétale INRA-INH-Université, Beaucouzé, 49071 France.
Vivian
Alan
A
Centre for Research in Plant Science, University of the West of England, Coldharbour Lane, Bristol BS16 1QY, UK.
Murillo
Jesús
J
Instituto de Agrobiotecnología y Recursos Naturales, CSIC-UPNA, and Laboratorio de Patología Vegetal, Departamento de Producción Agraria, Universidad Pública de Navarra, 31006 Pamplona, Spain.
D001483:Base Sequence; D017124:Conserved Sequence; D017931:DNA Primers; D005098:Exotoxins / Q000235:genetics*; D008969:Molecular Sequence Data; D005810:Multigene Family; D009952:Ornithine / Q000031:analogs & derivatives; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D044224:Pseudomonas syringae / Q000145:classification / Q000235:genetics* / Q000254:growth & development
D017931:DNA Primers; D005098:Exotoxins; C021234:phaseolotoxin; D009952:Ornithine