GenAlyzer: interactive visualization of sequence similarities between entire genomes.
CONCLUSIONS
Genalyzer is a software tool designed for the interactive visualization of sequence matches between DNA or protein sequences. It provides visualizations on different levels of granularity, from complete overviews via zoomed regions to alignments of particular matching substrings. Genalyzer can efficiently handle very large datasets, allowing to display tens of thousands of matches between sequences of tens of millions of bases.


BACKGROUND
Genalyzer is available free of charge for non-commercial research institutions. For more details, see http://www.genalyzer.de
Choudhuri
Jomuna V
JV
Faculty of Technology, University of Bielefeld, P.O. Box 100131, 33501 Bielefeld, Germany.
Schleiermacher
Chris
C
Kurtz
Stefan
S
Giegerich
Robert
R
D000465:Algorithms; D002874:Chromosome Mapping / Q000379:methods*; D003196:Computer Graphics; D017124:Conserved Sequence; D020407:Internet; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D017386:Sequence Homology, Amino Acid; D012689:Sequence Homology, Nucleic Acid; D012984:Software; D014584:User-Computer Interface