Chemo- and regioselective peptide cyclization triggered by the N-terminal fatty acid chain length: the recombinant cyclase of the calcium-dependent antibiotic from Streptomyces coelicolor.
Here we report the first biochemical characterization of a recombinant nonribosomal peptide cyclase of a streptomycete, the model actinomycete Streptomyces coelicolor A3(2). This bacterium produces the calcium-dependent antibiotic (CDA), which is a branched cyclic macrolactone belonging to the group of acidic lipopeptides. The recombinant CDA3 cyclase from CDA synthetase efficiently catalyzes ring formation of linear peptidyl thioester substrates based on a sequence analogous to natural CDA. Four leaving groups were attached to the C-terminus of the undecapeptide: coenzyme A (CoA), phosphopantetheine, N-acetylcysteamine (SNAC), and thiophenol. The best rates for cyclization were determined for the thiophenol substrate, revealing that chemical reactivity is more important than cofactor recognition. The cyclase catalyzes the formation of two regioisomeric macrolactones, which arise from simultaneous nucleophilic attack of the two adjacent Thr(2) and Ser(1) residues onto the C-terminus of the acyl-enzyme intermediate. This relaxed regioselectivity has not been observed for any other recombinant NRPS or PKS cyclases so far. Substitution of either Ser(1) or Thr(2) by alanine led to selective formation of a decapeptide or undecapeptide lactone ring. In contrast to that, CDA3 cyclase strictly retains stereoselectivity for both nucleophiles, accepting only l-configured Ser(1) and Thr(2) for cyclization. Further, our studies provide evidence for the crucial role of N-terminal fatty acyl groups of lipopeptides in controlling the regio- and chemoselectivity of enzyme-catalyzed macrocyclization. Elongation of the fatty acyl group of our thioester substrate from C(2) to C(6) as in CDA turned the relaxed regioselectivity into a strict regioselectivity, yielding solely the decapeptide lactone ring with a significantly improved cyclization-to-hydrolysis ratio.
Grünewald
Jan
J
Fachbereich Chemie/Biochemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse, D-35032 Marburg, Germany.
Sieber
Stephan A
SA
Marahiel
Mohamed A
MA
D000900:Anti-Bacterial Agents / Q000737:chemistry*; D002118:Calcium / Q000737:chemistry*; D002384:Catalysis; D003065:Coenzyme A / Q000737:chemistry; D005227:Fatty Acids / Q000737:chemistry*; D007476:Ionophores / Q000737:chemistry*; D007783:Lactones / Q000737:chemistry; D010205:Pantothenic Acid / Q000031:analogs & derivatives* / Q000737:chemistry; D010446:Peptide Fragments / Q000737:chemistry*; D010453:Peptide Synthases / Q000737:chemistry*; D010455:Peptides; D010456:Peptides, Cyclic / Q000737:chemistry; D017434:Protein Structure, Tertiary; D011993:Recombinant Fusion Proteins / Q000737:chemistry* / Q000235:genetics; D013237:Stereoisomerism; D013302:Streptomyces / Q000201:enzymology / Q000235:genetics; D013879:Thioredoxins / Q000737:chemistry / Q000235:genetics
D000900:Anti-Bacterial Agents; C040487:CDA antibiotic; D005227:Fatty Acids; D007476:Ionophores; D007783:Lactones; D010446:Peptide Fragments; D010455:Peptides; D010456:Peptides, Cyclic; D011993:Recombinant Fusion Proteins; D010205:Pantothenic Acid; C011988:phosphopantothenic acid; D013879:Thioredoxins; D010453:Peptide Synthases; D003065:Coenzyme A; D002118:Calcium