Photoreactive bicyclic amino acids as substrates for mutant Escherichia coli phenylalanyl-tRNA synthetases.
Unnatural amino acids carrying reactive groups that can be selectively activated under non-invasive biologically benign conditions are of interest in protein engineering as biological tools for the analysis of protein-protein and protein-nucleic acids interactions. The double ring system phenylalanine analogues benzofuranylalanine and benzotriazolylalanine were synthesized, and their photolability was tested by UV irradiation at 254, 320, and 365 nm. Although both showed photo reactivity, benzofuranylalanine appeared as the most promising compound because this amino acid was activated by UVA (long wavelength) irradiation. These amino acids were also tested for in vitro charging of tRNA(Phe) and for protein mutagenesis via the phenylalanyl-tRNA synthetase variant alphaA294G that is able to facilitate in vivo protein synthesis using a range of para-substituted phenylalanine analogues. The results demonstrate that benzofuranylalanine, but not benzotriazolylalanine, is a substrate for phenylalanine tRNA synthetase alphaA294G, and matrix-assisted laser desorption ionization time-of-flight analysis showed it to be incorporated into a model protein with high efficiency. The in vivo incorporation into a target protein of a bicyclic phenylalanine analogue, as described here, demonstrates the applicability of phenylalanine tRNA synthetase variants in expanding the scope of protein engineering.
Bentin
Thomas
T
Department of Medical Biochemistry and Genetics, The Panum Institute, University of Copenhagen, Blegdamsvej 3c, 2200 Copenhagen N, Denmark.
Hamzavi
Ramin
R
Salomonsson
Johan
J
Roy
Hervé
H
Ibba
Michael
M
Nielsen
Peter E
PE
D000409:Alanine / Q000031:analogs & derivatives* / Q000138:chemical synthesis; D000596:Amino Acids / Q000737:chemistry*; D001572:Benzofurans / Q000138:chemical synthesis; D004926:Escherichia coli / Q000201:enzymology* / Q000235:genetics*; D007700:Kinetics; D013058:Mass Spectrometry; D008956:Models, Chemical; D016296:Mutagenesis; D010649:Phenylalanine / Q000737:chemistry; D010652:Phenylalanine-tRNA Ligase / Q000235:genetics*; D011485:Protein Binding; D015202:Protein Engineering; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; D013379:Substrate Specificity; D013997:Time Factors; D014230:Triazoles / Q000138:chemical synthesis; D014466:Ultraviolet Rays
D000596:Amino Acids; D001572:Benzofurans; D014230:Triazoles; C486889:benzotriazolylalanine; D010649:Phenylalanine; C071671:3-(3-benzofuranylalanine); D010652:Phenylalanine-tRNA Ligase; D000409:Alanine