AntiHunter: searching BLAST output for EST antisense transcripts.
AntiHunter is a new web-based tool for the identification of expressed sequence tag (EST) antisense transcripts from BLAST output. In order to perform an analysis, user is required to input a genomic sequence plus an associated list of transcript names and coordinates of the genomic region (i.e. genome annotation). After masking the repeated regions (if any), program will perform a BLASTN search of the input sequence versus the selected EST database, reporting by Email the EST entries that reveal a putative antisense transcript with respect to the user supplied list.
Istituto Scientifico H. S. Raffaele, Via Olgettina 60, 20132 Milan, Italy. giovanni.lavorgna@hsr.it
Giovanni
G
Lavorgna
Luca
L
Sessa
Alessandro
A
Guffanti
Lelio
L
Lassandro
Giorgio
G
Casari
D000465:Algorithms; D016373:DNA, Antisense / Q000235:genetics*; D020224:Expressed Sequence Tags; D019146:Hypermedia; D016247:Information Storage and Retrieval / Q000379:methods*; D020407:Internet; D015203:Reproducibility of Results; D012680:Sensitivity and Specificity; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D014158:Transcription, Genetic / Q000235:genetics*
D016373:DNA, Antisense