Transcriptome analysis of O3-exposed Arabidopsis reveals that multiple signal pathways act mutually antagonistically to induce gene expression.
To analyze cellular responses to ozone (O3), we performed a large-scale analysis of the Arabidopsis transcriptome after plants were exposed to O3 for 12 h. By using cDNA macroarray technology, we identified 205 non-redundant expressed sequence tags (ESTs) that were regulated by O3. Of these, 157 were induced and 48 were suppressed by O3. A substantial proportion of these ESTs had predicted functions in cell rescue/defense processes. Using these isolated ESTs, we also undertook a comprehensive investigation of how three hormones, ethylene (ET), jasmonic acid (JA), and salicylic acid (SA), interact to regulate O3-induced genes in various genetic backgrounds of Arabidopsis, such as the ET-insensitive ein2-1, JA-resistant jar1-1, and SA-insensitive npr1-1. The expression of half of the 157 induced genes, especially cell rescue/defense genes, was controlled by ET and JA signaling, indicating that O3-induced defense gene expression at this stage was mainly regulated by ET and JA. Clustering analysis of the 157 O3-induced gene expressions revealed that multiple signal pathways act mutually antagonistically to induce the expression of these genes, and many cell rescue/defense genes induced by ET and JA signal pathways were suppressed by SA signaling, suggesting that the SA pathway acts as a strong antagonist to gene expression induced by ET and JA signaling.
Tamaoki
Masanori
M
Biodiversity Conservation Research Project, National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki, 305-8506 Japan. mtamaoki@nies.go.jp
Nakajima
Nobuyoshi
N
Kubo
Akihiro
A
Aono
Mitsuko
M
Matsuyama
Takashi
T
Saji
Hikaru
H
D017360:Arabidopsis / Q000187:drug effects* / Q000235:genetics; D016000:Cluster Analysis; D003517:Cyclopentanes / Q000494:pharmacology; D005030:Ethylenes / Q000494:pharmacology; D020869:Gene Expression Profiling; D018506:Gene Expression Regulation, Plant / Q000187:drug effects*; D009154:Mutation; D020411:Oligonucleotide Array Sequence Analysis; D054883:Oxylipins; D010126:Ozone / Q000494:pharmacology*; D020156:Salicylic Acid / Q000494:pharmacology; D014158:Transcription, Genetic / Q000187:drug effects*
D003517:Cyclopentanes; D005030:Ethylenes; D054883:Oxylipins; D010126:Ozone; C011006:jasmonic acid; C036216:ethylene; D020156:Salicylic Acid