Metabolic profiling: a new tool in the study of wood formation.
In the realm of plant genomics, metabolic profiling has become a valuable tool with which to assess the effect of genetic and/or environmental factors on plant development. This paper reports the first application of metabolic profiling on differentiating xylem tissue of loblolly pine. A protocol is presented for the analysis of loblolly pine xylem tissue. The effects of sample preparation, extraction, and derivatization on the corresponding metabolite profiles and yields have been investigated and are reported. Gas chromatography-mass spectroscopy has been used to quantify >60 polar and lipophilic metabolites from wood-forming tissue. It was possible to assign chemical structures to approximately half of these compounds. Comparison of six loblolly pine genotypes, three high cellulose (50-52%) and three medium (45-48%) cellulose, showed distinct metabolic profiles. Principal component analysis enabled the assignment of metabolic phenotypes using these large data sets. Metabolic phenotype clustering occurred in which the three high-cellulose genotypes were segregated from the medium-cellulose genotypes. These results demonstrate the use of metabolic profiling for the study of wood-forming tissue and as a tool in functional genomics.
Morris
Cameron R
CR
Wood Chemistry and Forest Biotechnology, North Carolina State University, Raleigh, North Carolina 27695, USA.
Scott
Jay T
JT
Chang
Hou-Min
HM
Sederoff
Ronald R
RR
O'Malley
David
D
Kadla
John F
JF
D002482:Cellulose / Q000032:analysis; D008401:Gas Chromatography-Mass Spectrometry; D005838:Genotype; D050356:Lipid Metabolism; D010641:Phenotype; D041603:Pinus taeda / Q000737:chemistry / Q000235:genetics / Q000378:metabolism*; D010936:Plant Extracts / Q000737:chemistry; D014934:Wood
D010936:Plant Extracts; D002482:Cellulose