Conformational analysis of complex oligosaccharides: the CICADA approach to the uromodulin O-glycans.
Uromodulin is the pregnancy-associated Tamm-Horsfall glycoprotein, with the enhanced ability to inhibit T-cell proliferation. Pregnancy-associated structural changes mainly occur in the O-glycosylation of this glycoprotein. These include up to 12 glycan structures, made up of an unusual core type 2 sequence terminated with one, two, or three sialyl Lewis(x) sequences; this type of O-glycans could serve as E- and P-selectin ligands. The present work focuses on the most complex one; a tetradecamer made up of a type 2 core carrying three sialyl Lewis(x) branches. Five different monosaccharides are assembled by 14 glycosidic linkages. The conformational behavior of the constituting disaccharide segments was evaluated using the flexible residue procedure of the MM3 molecular mechanics procedure. For each disaccharide, the adiabatic energy surface, along with the local energy minima were established. All these results were used for the generation, prior to complete optimization of the tetradecamer. This was followed by a complete exploration of conformational hyperspace throughout the use of the single coordinate method as implemented in the CICADA program. Despite the potential flexibility of the tetradecasaccharide, only four conformational families occur, accounting for more than 95% of the total low energy conformations. For each family, the molecular properties (electrostatic, lipophilicity, and hydrogen potential) were studied. The shape of the tetradecasaccharide is best described as a flat ribbon, flanked by three branches having terminal sialyl residues. Two of the branches interact through nonbonded interactions, bringing further energy stabilization, and limiting the conformational flexibility of the sialyl residues. Only one branch maintains the original conformational features of sialyl Lewis(x). This O-glycan can be seen as a fascinating example of 'dendrimeric' structure, where the spatial arrangement of three S-Le(x) epitopes may favor its complementary 'presentations' for the interactions with E- and P-selectins.
Cioci
Gianluca
G
Centre de Recherches sur les Macromolécules Végétales, CNRS and Joseph Fourier University, IFR 2607, BP#53, F-38041 Grenoble, France. gianluca.cioci@cermav.cnrs.fr
Rivet
Alain
A
Koca
Jaroslav
J
Pérez
Serge
S
D002236:Carbohydrate Conformation; D019295:Computational Biology; D009088:Mucoproteins / Q000737:chemistry*; D009844:Oligosaccharides / Q000737:chemistry*; D012984:Software; D058949:Uromodulin
D009088:Mucoproteins; D009844:Oligosaccharides; D058949:Uromodulin