RAPD marker and substrate utilization pattern applied to study microbial community diversity in the soil affected by agricultural chemicals.
Present analyses of random amplified polymorphic DNA (RAPD) and Biolog GN substrate utilization pattern are combined to further study the diversity of microbial communities in four soils affected by agricultural chemicals. The results showed that the four soil microbial communities were apparently distinguishable in the diversity at RAPD level in terms of the richness and modified richness in the summer, which supports our previous report using the same soils in winter. A significant difference for the average well color development (AWCD) at 72 h incubation was found among the soils in winter using Biolog GN substrate utilization pattern, but this difference was not found among the soils in summer. However, Shannon-Weaver indices for microbial communities in the summer soils polluted by agricultural chemicals were significantly higher than those in winter at metabolic level; in contrast, no significant difference existed between the two seasons for microbial communities in the soil without chemical pollution. Present results suggest that the combined approach using RAPD and substrate utilization pattern could be used to effectively quantify microbial community diversity and its changes among the seasons in the soils affected by agricultural chemicals, simultaneously at molecular and physiological levels.
Yang
Yong-Hua
YH
State Key Laboratory of Pharmaceutical Biotechnology, Department of Biological Science and Technology, College of Life Science, Nanjing University, Nanjing, PR China. yangyh@nju.edu.cn
Yao
Jian
J
Wang
Meng-Cheng
MC
D000383:Agriculture; D018533:Biomass; D016172:DNA Fingerprinting; D004269:DNA, Bacterial / Q000032:analysis*; D004784:Environmental Monitoring; D011157:Population Dynamics; D019105:Random Amplified Polymorphic DNA Technique / Q000379:methods*; D012621:Seasons; D012988:Soil Microbiology; D012989:Soil Pollutants / Q000009:adverse effects*
D004269:DNA, Bacterial; D012989:Soil Pollutants