A tool for gene expression based PubMed search through combining data sources.
We present a new tool for the semi-automated querying of PubMed using a batch of tens to thousands of GenBank accession numbers or UniGene cluster ids. By combining information from UniGene and SWISS-PROT, microGENIE obtains information on the biological relevance of expressed genes, as identified by micro-array experiments, with minimal user intervention and time investment.


BACKGROUND
microGENIE is freely available from http://www.cs.vu.nl/microgenie


BACKGROUND
The web site above supplies examples of input and output files.
Korotkiy
Maksym
M
Division of Computer Science, VU University Medical Center, Vrije Universiteit, Amsterdam, The Netherlands.
Middelburg
Rutger
R
Dekker
Henk
H
van Harmelen
Frank
F
Lankelma
Jan
J
D003628:Database Management Systems; D030541:Databases, Genetic; D020869:Gene Expression Profiling / Q000379:methods*; D016247:Information Storage and Retrieval / Q000379:methods*; D009323:Natural Language Processing; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D039781:PubMed; D011642:Publications; D012984:Software; D009626:Terminology as Topic; D014584:User-Computer Interface