title: A tool for gene expression based PubMed search through combining data sources.
abstract: We present a new tool for the semi-automated querying of PubMed using a batch of tens to thousands of GenBank accession numbers or UniGene cluster ids. By combining information from UniGene and SWISS-PROT, microGENIE obtains information on the biological relevance of expressed genes, as identified by micro-array experiments, with minimal user intervention and time investment.
  
  
  BACKGROUND
  microGENIE is freely available from http://www.cs.vu.nl/microgenie
  
  
  BACKGROUND
  The web site above supplies examples of input and output files.
authors.affiliation: Division of Computer Science, VU University Medical Center, Vrije Universiteit, Amsterdam, The Netherlands.
authors.forename: Maksym
authors.initials: M
authors.lastname: Korotkiy
authors.forename: Rutger
authors.initials: R
authors.lastname: Middelburg
authors.forename: Henk
authors.initials: H
authors.lastname: Dekker
authors.forename: Frank
authors.initials: F
authors.lastname: van Harmelen
authors.forename: Jan
authors.initials: J
authors.lastname: Lankelma
mesh_terms: D003628:Database Management Systems; D030541:Databases, Genetic; D020869:Gene Expression Profiling / Q000379:methods*; D016247:Information Storage and Retrieval / Q000379:methods*; D009323:Natural Language Processing; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D039781:PubMed; D011642:Publications; D012984:Software; D009626:Terminology as Topic; D014584:User-Computer Interface