title: Two new subspecies of Photorhabdus luminescens, isolated from Heterorhabditis bacteriophora (Nematoda: Heterorhabditidae): Photorhabdus luminescens subsp. kayaii subsp. nov. and Photorhabdus luminescens subsp. thracensis subsp. nov.
abstract: Bacterial isolates from nematodes from Turkish soil samples were initially characterized by molecular methods and seven members of the genus Photorhabdus identified to the species level, using riboprint analyses and metabolic properties. Strain 07-5 (DSM 15195) was highly related to the type strain of Photorhabdus luminescens subsp. laumondii DSM 15139T, and was regarded a strain of this subspecies. Strains 1121T (DSM 15194T), 68-3 (DSM 15198) and 47-10 (DSM 15197) formed one, strain 39-8T (DSM 15199T), 39-7 (DSM 15196) and 01-12 (DSM 15193) formed a second cluster that branched intermediate the three subspecies of Photorhabdus luminescens. Based upon moderate 16S rRNA gene sequence similarities and differences in metabolic properties among themselves and with type strains of the three subspecies we consider the two clusters to represent two new subspecies of Photorhabdus luminescens for which the names Photorhabdus luminescens subsp. kayaii, type strain 1121T (DSM 15194T, NCIMB 13951T), and Photorhabdus luminescens subsp. thracensis subsp. nov., type strain 39-8T (DSM 15199T, NCIMB 13952T) are proposed.
authors.affiliation: Hacettepe University Faculty of Science, Department of Biology, Beytepe, Ankara, Turkey.
authors.forename: Selçuk
authors.initials: S
authors.lastname: Hazir
authors.forename: Erko
authors.initials: E
authors.lastname: Stackebrandt
authors.forename: Elke
authors.initials: E
authors.lastname: Lang
authors.forename: Peter
authors.initials: P
authors.lastname: Schumann
authors.forename: Ralf-Udo
authors.initials: RU
authors.lastname: Ehlers
authors.forename: Nevin
authors.initials: N
authors.lastname: Keskin
mesh_terms: D000818:Animals; D001483:Base Sequence; D016000:Cluster Analysis; D004269:DNA, Bacterial / Q000737:chemistry / Q000235:genetics; D008969:Molecular Sequence Data; D009348:Nematoda / Q000382:microbiology*; D020637:Photorhabdus / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D012336:RNA, Ribosomal, 16S / Q000737:chemistry / Q000235:genetics; D021521:Ribotyping; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology; D014421:Turkey
chemical_list: D004269:DNA, Bacterial; D012336:RNA, Ribosomal, 16S