title: FISH shows that Desulfotomaculum spp. are the dominating sulfate-reducing bacteria in a pristine aquifer.
abstract: The hydrochemistry and the microbial diversity of a pristine aquifer system near Garzweiler, Germany, were characterized. Hydrogeochemical and isotopic data indicate a recent activity of sulfate-reducing bacteria in the Tertiary marine sands. The community structure in the aquifer was studied by fluorescence in situ hybridization (FISH). Up to 7.3 x 10(5) cells/mL were detected by DAPI-staining. Bacteria (identified by the probe EUB338) were dominant, representing 51.9% of the total cell number (DAPI). Another 25.7% of total cell were affiliated with the domain Archaea as identified by the probe ARCH915. Within the domain Bacteria, the beta-Proteobacteria were most abundant (21.0% of total cell counts). Using genus-specific probes for sulfate-reducing bacteria (SRB), 2.5% of the total cells were identified as members of the genus Desulfotomaculum. This reflects the predominant role these microorganisms have been found to play in sulfate-reducing zones of aquifers at other sites. Previously, all SRB cultured from this site were from the spore-forming genera Desulfotomaculum and Desulfosporosinus.
authors.affiliation: Department of Microbiology, Max-Planck-Institute for Marine Microbiology, Celsiusstrasse 1, D-28359 Bremen, Germany.
authors.forename: J
authors.initials: J
authors.lastname: Detmers
authors.forename: H
authors.initials: H
authors.lastname: Strauss
authors.forename: U
authors.initials: U
authors.lastname: Schulte
authors.forename: A
authors.initials: A
authors.lastname: Bergmann
authors.forename: K
authors.initials: K
authors.lastname: Knittel
authors.forename: J
authors.initials: J
authors.lastname: Kuever
mesh_terms: D001105:Archaea / Q000235:genetics / Q000502:physiology; D045859:Desulfotomaculum / Q000235:genetics / Q000502:physiology*; D017753:Ecosystem; D005618:Fresh Water / Q000737:chemistry / Q000382:microbiology*; D005858:Germany; D017404:In Situ Hybridization, Fluorescence; D016013:Likelihood Functions; D008957:Models, Genetic; D009841:Oligonucleotides; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D014871:Water Microbiology
chemical_list: D009841:Oligonucleotides