A new set of bioinformatics tools for genome projects.
A new tool called System for Automated Bacterial Integrated Annotation--SABIA (SABIA being a very well-known bird in Brazil) was developed for the assembly and annotation of bacterial genomes. This system performs automatic tasks of assembly analysis, ORFs identification/analysis, and extragenic region analyses. Genome assembly and contig automatic annotation data are also available in the same working environment. The system integrates several public domains and newly developed software programs capable of dealing with several types of databases, and it is portable to other operational systems. These programs interact with most of the well-known biological database/softwares, such as Glimmer, Genemark, the BLAST family programs, InterPro, COG, Kegg, PSORT, GO, tRNAScan and RBSFinder, and can also be used to identify metabolic pathways.
Almeida
Luiz G P
LG
Laboratório Nacional de Computação Científica/Ministério de Ciência e Tecnologia, Petrópolis, RJ, Brasil.
Paixão
Roger
R
Souza
Rangel C
RC
Costa
Gisele C da
GC
Almeida
Darcy F de
DF
Vasconcelos
Ana T R de
AT
D001938:Brazil; D002861:Chromobacterium / Q000235:genetics*; D019295:Computational Biology / Q000295:instrumentation / Q000379:methods*; D030541:Databases, Genetic; D016680:Genome, Bacterial; D012984:Software