title: Development of a rapid, sensitive and specific diagnostic assay for fish Aquareovirus based on RT-PCR.
abstract: A rapid, sensitive and highly specific detection method for Aquareovirus based on reverse-transcription polymerase chain reaction (RT-PCR) was developed. Based on multiple sequence alignment of the cloned sequences of a local isolates, the Threadfin reovirus (TFV) and Guppy reovirus (GPV) with Grass carp reovirus (GCRV), a pair of degenerate primers was selected carefully and synthesized. Using this primer combination, only one specific product, approximately 450 bp in length was obtained when RT-PCR was carried out using the genomic double-stranded RNA (dsRNA) of TFV, GPV and GCRV. Similar results were also obtained when Chum salmon reovirus (CSRV) and Striped bass reovirus (SBRV) dsRNA were used as templates. No products were observed when nucleic acids other than the dsRNA of the aquareoviruses described above were used as RT-PCR templates. This technique could detect not only TFV but also GPV and GCRV in low titer virus-infected cell cultured cells. Furthermore, this method has also been shown to be able to diagnose GPV-infected guppy (Poecilia reticulata) that exhibit clinical symptoms as well as GPV-carrier guppy. Collectively, these results showed that the RT-PCR amplification method using specific degenerate primers described below is very useful for rapid and accurate detection of a variety of aquareovirus strains isolated from different host species and origin.
authors.affiliation: Department of Biological Sciences, National University of Singapore, Block S1A, 05-02 Virology Lab, 14 Science Drive 4, Singapore 117543, Singapore. dbssek@nus.edu.sg
authors.forename: E K
authors.initials: EK
authors.lastname: Seng
authors.forename: Q
authors.initials: Q
authors.lastname: Fang
authors.forename: T J
authors.initials: TJ
authors.lastname: Lam
authors.forename: Y M
authors.initials: YM
authors.lastname: Sin
mesh_terms: D000818:Animals; D001483:Base Sequence; D002347:Carps / Q000821:virology; D002460:Cell Line; D005393:Fish Diseases / Q000175:diagnosis* / Q000821:virology; D005399:Fishes / Q000821:virology*; D008969:Molecular Sequence Data; D011036:Poecilia / Q000821:virology; D012087:Reoviridae / Q000235:genetics / Q000302:isolation & purification* / Q000472:pathogenicity; D012088:Reoviridae Infections / Q000662:veterinary* / Q000821:virology; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000379:methods*; D012680:Sensitivity and Specificity; D013997:Time Factors