Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension.
This paper demonstrates how to create an HFPNe (hybrid functional Petri net with extension) model, using the lac operon gene regulatory mechanism and glycolytic pathway as an example. Using this example, readers can then model other biopathways of interest. Simulations of the HFPNe model were performed using the software package Genomic Object Net.
Doi
Atsushi
A
Graduate School of Science and Engineering, Yamaguchi University, Yoshida, Yamaguchi, Japan.
Nagasaki
Masao
M
Fujita
Sachie
S
Matsuno
Hiroshi
H
Miyano
Satoru
S
D003198:Computer Simulation; D004282:Documentation; D004926:Escherichia coli / Q000235:genetics / Q000378:metabolism*; D015964:Gene Expression Regulation, Bacterial / Q000502:physiology*; D006019:Glycolysis / Q000502:physiology*; D007763:Lac Operon / Q000235:genetics*; D008954:Models, Biological; D009097:Multienzyme Complexes / Q000235:genetics / Q000378:metabolism; D015398:Signal Transduction / Q000502:physiology; D012984:Software; D014584:User-Computer Interface
D009097:Multienzyme Complexes