title: Genomic Object Net: II. Modelling biopathways by hybrid functional Petri net with extension.
abstract: This paper demonstrates how to create an HFPNe (hybrid functional Petri net with extension) model, using the lac operon gene regulatory mechanism and glycolytic pathway as an example. Using this example, readers can then model other biopathways of interest. Simulations of the HFPNe model were performed using the software package Genomic Object Net.
authors.affiliation: Graduate School of Science and Engineering, Yamaguchi University, Yoshida, Yamaguchi, Japan.
authors.forename: Atsushi
authors.initials: A
authors.lastname: Doi
authors.forename: Masao
authors.initials: M
authors.lastname: Nagasaki
authors.forename: Sachie
authors.initials: S
authors.lastname: Fujita
authors.forename: Hiroshi
authors.initials: H
authors.lastname: Matsuno
authors.forename: Satoru
authors.initials: S
authors.lastname: Miyano
mesh_terms: D003198:Computer Simulation; D004282:Documentation; D004926:Escherichia coli / Q000235:genetics / Q000378:metabolism*; D015964:Gene Expression Regulation, Bacterial / Q000502:physiology*; D006019:Glycolysis / Q000502:physiology*; D007763:Lac Operon / Q000235:genetics*; D008954:Models, Biological; D009097:Multienzyme Complexes / Q000235:genetics / Q000378:metabolism; D015398:Signal Transduction / Q000502:physiology; D012984:Software; D014584:User-Computer Interface
chemical_list: D009097:Multienzyme Complexes