title: Differential gene expression in response to hydrogen peroxide and the putative PerR regulon of Synechocystis sp. strain PCC 6803.
abstract: We utilized a full genome cDNA microarray to identify the genes that comprise the peroxide stimulon in the cyanobacterium Synechocystis sp. strain PCC 6803. We determined that a gene (slr1738) encoding a protein similar to PerR in Bacillus subtilis was induced by peroxide. We constructed a PerR knockout strain and used it to help identify components of the PerR regulon, and we found that the regulatory properties were consistent with the hypothesis that PerR functions as a repressor. This effort was guided by finding putative PerR boxes in positions upstream of specific genes and by careful statistical analysis. PerR and sll1621 (ahpC), which codes for a peroxiredoxin, share a divergent promoter that is regulated by PerR. We found that isiA, encoding a Chl protein that is induced under low-iron conditions, was strongly induced by a short-term peroxide stress. Other genes that were strongly induced by peroxide included sigD, sigB, and genes encoding peroxiredoxins and Dsb-like proteins that have not been studied yet in this strain. A gene (slr1894) that encoded a protein similar to MrgA in B. subtilis was upregulated by peroxide, and a strain containing an mrgA knockout mutation was highly sensitive to peroxide. A number of genes were downregulated, including key genes in the chlorophyll biosynthesis pathway and numerous regulatory genes, including those encoding histidine kinases. We used PerR mutants and a thioredoxin mutant (TrxA1) to study differential expression in response to peroxide and determined that neither PerR nor TrxA1 is essential for the peroxide protective response.
authors.affiliation: Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA.
authors.forename: Hong
authors.initials: H
authors.lastname: Li
authors.forename: Abhay K
authors.initials: AK
authors.lastname: Singh
authors.forename: Lauren M
authors.initials: LM
authors.lastname: McIntyre
authors.forename: Louis A
authors.initials: LA
authors.lastname: Sherman
mesh_terms: D001426:Bacterial Proteins / Q000235:genetics*; D000458:Cyanobacteria / Q000235:genetics*; D015964:Gene Expression Regulation, Bacterial / Q000187:drug effects*; D005809:Genes, Regulator; D006861:Hydrogen Peroxide / Q000494:pharmacology*; D018832:Molecular Chaperones / Q000235:genetics; D010788:Photosynthesis; D018085:Regulon / Q000502:physiology*; D012097:Repressor Proteins / Q000235:genetics*; D013879:Thioredoxins / Q000235:genetics; D014157:Transcription Factors / Q000235:genetics*
chemical_list: D001426:Bacterial Proteins; D018832:Molecular Chaperones; D012097:Repressor Proteins; D014157:Transcription Factors; C122138:peroxide repressor proteins; D013879:Thioredoxins; D006861:Hydrogen Peroxide