title: Effect of valine 106 on structure-function relation of cytosolic human thymidine kinase. Kinetic properties and oligomerization pattern of nine substitution mutants of V106.
abstract: Information on the regulation and structure-function relation of enzymes involved in DNA precursor synthesis is pivotal, as defects in several of these enzymes have been found to cause depletion or deletion of mitochondrial DNA resulting in severe diseases. Here, the effect of amino acid 106 on the enzymatic properties of the cell-cycle-regulated human cytosolic thymidine kinase 1 (TK1) is investigated. On the basis of the previously observed profound differences between recombinant TK1 with Val106 (V106WT) and Met106 (V106M) in catalytic activity and oligomerization pattern, we designed and characterized nine mutants of amino acid 106 differing in size, conformation and polarity. According to their oligomerization pattern and thymidine kinetics, the TK1 mutants can be divided into two groups. Group I (V106A, V106I and V106T) behaves like V106WT, in that pre-assay exposure to ATP induces reversible transition from a dimer with low catalytic activity to a tetramer with high catalytic activity. Group II (V106G, V106H, V106K, V106L and V106Q) behaves like V106M in that they are permanently high activity tetramers, irrespective of ATP exposure. We conclude that size and conformation of amino acid 106 are more important than polarity for the catalytic activity and oligomerization of TK1. The role of amino acid 106 and the sequence surrounding it for dimer-tetramer transition was confirmed by cloning the putative interface fragment of human TK1 and investigating its oligomerization pattern.
authors.affiliation: Department of Life Sciences and Chemistry, Roskilde University, DK-4000 Roskilde, Denmark.
authors.forename: Hanne
authors.initials: H
authors.lastname: Frederiksen
authors.forename: Dvora
authors.initials: D
authors.lastname: Berenstein
authors.forename: Birgitte
authors.initials: B
authors.lastname: Munch-Petersen
mesh_terms: D000595:Amino Acid Sequence; D019943:Amino Acid Substitution; D000818:Animals; D003600:Cytosol / Q000201:enzymology; D006801:Humans; D007700:Kinetics; D008969:Molecular Sequence Data; D008970:Molecular Weight; D009154:Mutation; D020836:Protein Structure, Quaternary; D021122:Protein Subunits / Q000737:chemistry; D016415:Sequence Alignment; D013329:Structure-Activity Relationship; D013937:Thymidine Kinase / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D014633:Valine / Q000737:chemistry* / Q000235:genetics / Q000502:physiology
chemical_list: D021122:Protein Subunits; D013937:Thymidine Kinase; C092717:thymidine kinase 1; D014633:Valine