Automatic annotation of organellar genomes with DOGMA.
The Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of organellar (plant chloroplast and animal mitochondrial) genomes. It is a Web-based package that allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes. DOGMA provides a graphical user interface for viewing and editing annotations. Annotations are stored on our password-protected server to enable repeated sessions of working on the same genome. Finished annotations can be extracted for direct submission to GenBank.
Wyman
Stacia K
SK
Department of Computer Sciences, Institute of Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA. stacia@cs.utexas.edu
Jansen
Robert K
RK
Boore
Jeffrey L
JL
D000818:Animals; D002736:Chloroplasts / Q000235:genetics; D002874:Chromosome Mapping / Q000379:methods*; D003628:Database Management Systems; D030541:Databases, Genetic; D004282:Documentation / Q000379:methods*; D016247:Information Storage and Retrieval / Q000379:methods*; D008928:Mitochondria / Q000235:genetics; D015388:Organelles / Q000235:genetics*; D016415:Sequence Alignment; D017421:Sequence Analysis / Q000379:methods; D012984:Software; D014584:User-Computer Interface