title: Phylogeny of Mycobacterium avium strains inferred from glycopeptidolipid biosynthesis pathway genes.
abstract: The Mycobacterium avium complex (MAC) encompasses two species, M. avium and Mycobacterium intracellulare, which are opportunistic pathogens of humans and animals. The standard method of MAC strain differentiation is serotyping based on a variation in the antigenic glycopeptidolipid (GPL) composition. To elucidate the relationships among M. avium serotypes a phylogenetic analysis of 13 reference and clinical M. avium strains from 8 serotypes was performed using as markers two genomic regions (890 bp of the gtfB gene and 2150 bp spanning the rtfA-mtfC genes) which are associated with the strains' serological properties. Strains belonging to three other known M. avium serotypes were not included in the phylogeny inference due to apparent lack of the marker sequences in their genomes, as revealed by PCR and Southern blot analysis. These studies suggest that serotypes prevalent in AIDS patients have multiple origins. In trees inferred from both markers, serotype 1 strains, known to have the simplest and shortest GPLs among all other serotypes, were polyphyletic. Likewise, comparisons of the inferred phylogenies with the molecular typing results imply that the existing tools used in epidemiological studies may be poor estimators of M. avium strain relatedness. Additionally, trees inferred from each marker had significantly incongruent topologies due to a well supported alternative placement of strain 2151, suggesting a complex evolutionary history of this genomic region.
authors.affiliation: Department of Biological Sciences, Center for Tropical Disease Research and Training, University of Notre Dame, 130 Galvin Life Science Center, Notre Dame, IN 46556, USA.
authors.forename: Elzbieta
authors.initials: E
authors.lastname: Krzywinska
authors.affiliation: Department of Biological Sciences, Center for Tropical Disease Research and Training, University of Notre Dame, 130 Galvin Life Science Center, Notre Dame, IN 46556, USA.
authors.forename: Jaroslaw
authors.initials: J
authors.lastname: Krzywinski
authors.affiliation: Department of Biological Sciences, Center for Tropical Disease Research and Training, University of Notre Dame, 130 Galvin Life Science Center, Notre Dame, IN 46556, USA.
authors.forename: Jeffrey S
authors.initials: JS
authors.lastname: Schorey
mesh_terms: D000818:Animals; D001426:Bacterial Proteins / Q000235:genetics* / Q000378:metabolism; D002240:Carbohydrate Sequence; D005964:Glucosyltransferases / Q000235:genetics; D006017:Glycolipids / Q000096:biosynthesis* / Q000737:chemistry; D006020:Glycopeptides / Q000096:biosynthesis* / Q000737:chemistry; D006602:Hexosyltransferases / Q000235:genetics; D006801:Humans; D008969:Molecular Sequence Data; D015269:Mycobacterium avium Complex / Q000145:classification* / Q000235:genetics; D015270:Mycobacterium avium-intracellulare Infection / Q000382:microbiology; D010802:Phylogeny; D017422:Sequence Analysis, DNA
chemical_list: D001426:Bacterial Proteins; D006017:Glycolipids; D006020:Glycopeptides; C036655:1,3-alpha-D-glucan synthase; D005964:Glucosyltransferases; D006602:Hexosyltransferases; C116032:RtfA protein, Mycobacterium avium