title: TMRPres2D: high quality visual representation of transmembrane protein models.
abstract: The 'TransMembrane protein Re-Presentation in 2-Dimensions' (TMRPres2D) tool, automates the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and structural information may be acquired from public protein knowledge bases, emanate from prediction algorithms, or even be defined by the user. Several important biological and physical sequence attributes can be embedded in the graphical representation.
authors.affiliation: Department of Cell Biology and Biophysics, Faculty of Biology, University of Athens, Panepistimiopolis, Athens 157 01, Greece.
authors.forename: Ioannis C
authors.initials: IC
authors.lastname: Spyropoulos
authors.forename: Theodore D
authors.initials: TD
authors.lastname: Liakopoulos
authors.forename: Pantelis G
authors.initials: PG
authors.lastname: Bagos
authors.forename: Stavros J
authors.initials: SJ
authors.lastname: Hamodrakas
mesh_terms: D000595:Amino Acid Sequence; D003196:Computer Graphics; D008565:Membrane Proteins / Q000737:chemistry*; D008958:Models, Molecular; D008969:Molecular Sequence Data; D011487:Protein Conformation; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software; D012985:Software Design; D014584:User-Computer Interface
chemical_list: D008565:Membrane Proteins