title: A genome-wide scan of serum lipid levels in the Old Order Amish.
abstract: Elevated serum low density lipoprotein cholesterol (LDL-C) and triglyceride (TG) and decreased high density lipoprotein cholesterol (HDL-C) levels are established risk factors for cardiovascular disease (CVD). To identify quantitative trait loci influencing lipid levels, we conducted genome-wide linkage analyses of total serum cholesterol (TSC), HDL-C, ln-transformed TG (LNTG) and LDL-C levels in 612 individuals from 28 families of the Amish Family Diabetes Study (AFDS). Subjects were genotyped for 373 microsatellite markers covering all 22 autosomes and the X chromosome at an average density of 9.7 centimorgans. All lipid traits exhibited moderate estimated heritability (h2 +/- S.E.): TSC, 0.63 +/- 0.11; HDL-C, 0.54 +/- 0.08; LNTG, 0.37 +/- 0.08; LDL-C, 0.62 +/- 0.10. The highest logarithm of the odds (LOD) score observed was 2.47 (P = 0.0003), at 3p25 for LDL-C. LOD scores exceeding 2.0 (P < 0.001) were also observed at 2p23 (LOD = 2.17) and 19p13 (LOD = 2.23) for LDL-C, and at 11q23 (LOD = 2.03) for LNTG. Three additional regions exhibited LOD scores greater than 1.5, corresponding to a P-value of <0.005. Many of the regions suggestively linked in this genome-wide scan contain genes encoding proteins with established roles in lipid metabolism, including apolipoproteins, peroxisome proliferater-activated receptor-gamma and the LDL receptor.
authors.affiliation: Division of Endocrinology, Diabetes, and Nutrition, University of Maryland School of Medicine, 660 W Redwood Street, Room 492, Baltimore, MD 21201, USA.
authors.forename: Toni I
authors.initials: TI
authors.lastname: Pollin
authors.forename: Wen-Chi
authors.initials: WC
authors.lastname: Hsueh
authors.forename: Nanette I
authors.initials: NI
authors.lastname: Steinle
authors.forename: Soren
authors.initials: S
authors.lastname: Snitker
authors.forename: Alan R
authors.initials: AR
authors.lastname: Shuldiner
authors.forename: Braxton D
authors.initials: BD
authors.lastname: Mitchell
mesh_terms: D000328:Adult; D000367:Age Factors; D000368:Aged; D008076:Cholesterol, HDL / Q000032:analysis / Q000235:genetics*; D008078:Cholesterol, LDL / Q000032:analysis / Q000235:genetics*; D015331:Cohort Studies; D003324:Coronary Artery Disease / Q000208:ethnology / Q000235:genetics*; D005260:Female; D008040:Genetic Linkage; D005820:Genetic Testing; D005828:Genetics, Population; D015894:Genome, Human; D005838:Genotype; D006801:Humans; D006937:Hypercholesterolemia / Q000208:ethnology / Q000235:genetics*; D008126:Lod Score; D008297:Male; D008875:Middle Aged; D011336:Probability; D012307:Risk Factors; D012737:Sex Factors; D044465:White People / Q000235:genetics*
chemical_list: D008076:Cholesterol, HDL; D008078:Cholesterol, LDL