Interspecies comparison of neuroglobin, cytoglobin and myoglobin: sequence evolution and candidate regulatory elements.
Neuroglobin and cytoglobin are two novel members of the vertebrate globin family. Their physiological role is poorly understood, although both proteins bind oxygen reversibly and may be involved in cellular oxygen homeostasis. Here we investigate the selective constraints on coding and non-coding sequences of the neuroglobin and cytoglobin genes in human, mouse, rat and fish. Neuroglobin and cytoglobin are highly conserved, displaying very low levels of non-synonymous nucleotide substitutions. An oxygen supply function predicts distinct modes of gene regulation, involving hypoxia-responsive transcription factors. To detect conserved candidate regulatory elements, we compared the neuroglobin and cytoglobin genes in mammals and fish. The myoglobin gene was included to test if it also contains hypoxia-responsive regulatory elements. Long conserved non-coding sequences, indicative of gene-regulatory elements, were found in the cytoglobin and myoglobin, but not in the neuroglobin gene. Sequence comparison and experimental data allowed us to delimit upstream regions of the neuroglobin and cytoglobin genes that contain the putative promoters, defining candidate regulatory regions for functional tests. The neuroglobin and the myoglobin genes both lack conserved hypoxia-responsive elements (HREs) for transcriptional activation, but contain conserved hypoxia-inducible mRNA stabilization signals in their 3' untranslated regions. The cytoglobin gene, in contrast, harbors both conserved HREs and mRNA stabilization sites, strongly suggestive of an oxygen-dependent regulation.
Wystub
S
S
Institute of Molecular Genetics and Institute of Zoology, Johannes Gutenberg University Mainz, Mainz, Germany.
Ebner
B
B
Fuchs
C
C
Weich
B
B
Burmester
T
T
Hankeln
T
T
D000818:Animals; D001483:Base Sequence; D001665:Binding Sites; D005075:Biological Evolution; D004247:DNA / Q000378:metabolism; D005399:Fishes / Q000235:genetics; D005786:Gene Expression Regulation; D005914:Globins / Q000235:genetics*; D006801:Humans; D008322:Mammals / Q000235:genetics; D051379:Mice; D008969:Molecular Sequence Data; D009211:Myoglobin / Q000235:genetics*; D009419:Nerve Tissue Proteins / Q000235:genetics*; D000078787:Neuroglobin; D010100:Oxygen / Q000502:physiology; D051381:Rats; D012045:Regulatory Sequences, Nucleic Acid; D016415:Sequence Alignment; D013045:Species Specificity; D014157:Transcription Factors / Q000378:metabolism
D009211:Myoglobin; D009419:Nerve Tissue Proteins; D000078787:Neuroglobin; D014157:Transcription Factors; D005914:Globins; D004247:DNA; D010100:Oxygen