title: Two C-P lyase operons in Pseudomonas stutzeri and their roles in the oxidation of phosphonates, phosphite, and hypophosphite.
abstract: DNA sequencing and analysis of two distinct C-P lyase operons in Pseudomonas stutzeri WM88 were completed. The htxABCDEFGHIJKLMN operon encodes a hypophosphite-2-oxoglutarate dioxygenase (HtxA), whereas the predicted amino acid sequences of HtxB to HtxN are each homologous to the components of the Escherichia coli phn operon, which encodes C-P lyase, although homologs of E. coli phnF and phnO are absent. The genes in the htx operon are cotranscribed based on gene organization, and the presence of the intergenic sequences is verified by reverse transcription-PCR with total RNA. Deletion of the htx locus does not affect the ability of P. stutzeri to grow on phosphonates, indicating the presence of an additional C-P lyase pathway in this organism. To identify the genes comprising this pathway, a Deltahtx strain was mutagenized and one mutant lacking the ability to grow on methylphosphonate as the sole P source was isolated. A ca.-10.6-kbp region surrounding the transposon insertion site of this mutant was sequenced, revealing 13 open reading frames, designated phnCDEFGHIJKLMNP, which were homologous to the E. coli phn genes. Deletion of both the htx and phn operons of P. stutzeri abolishes all growth on methylphosphonate and aminoethylphosphonate. Both operons individually support growth on methylphosphonate; however, the phn operon supports growth on aminoethylphosphonate and phosphite, as well. The substrate ranges of both C-P lyases are limited, as growth on other phosphonate compounds, including glyphosate and phenylphosphonate, was not observed.
authors.affiliation: Department of Microbiology, University of Illinois, B103 Chemical and Life Sciences Laboratory, 601 S. Goodwin Ave., Urbana, IL 61801, USA.
authors.forename: Andrea K
authors.initials: AK
authors.lastname: White
authors.forename: William W
authors.initials: WW
authors.lastname: Metcalf
mesh_terms: D004269:DNA, Bacterial / Q000737:chemistry / Q000302:isolation & purification; D021901:DNA, Intergenic; D004926:Escherichia coli / Q000235:genetics; D017353:Gene Deletion; D023061:Gene Order; D005998:Glycine / Q000031:analogs & derivatives* / Q000378:metabolism; D007555:Isoxazoles; D008190:Lyases / Q000235:genetics* / Q000378:metabolism*; D008969:Molecular Sequence Data; D016254:Mutagenesis, Insertional; D016366:Open Reading Frames; D009876:Operon; D063065:Organophosphonates / Q000378:metabolism*; D009943:Organophosphorus Compounds / Q000378:metabolism; D010084:Oxidation-Reduction; D017905:Phosphites / Q000378:metabolism*; D044223:Pseudomonas stutzeri / Q000201:enzymology* / Q000235:genetics / Q000254:growth & development / Q000378:metabolism; D017422:Sequence Analysis, DNA; D017386:Sequence Homology, Amino Acid; D013379:Substrate Specificity; D013777:Tetrazoles; D014158:Transcription, Genetic; D000097797:Glyphosate
chemical_list: D004269:DNA, Bacterial; D021901:DNA, Intergenic; D005998:Glycine; D007555:Isoxazoles; D008190:Lyases; D063065:Organophosphonates; D009943:Organophosphorus Compounds; D017905:Phosphites; D013777:Tetrazoles; D000097797:Glyphosate; C032627:methylphosphonic acid; C023604:phenylphosphonic acid; C051328:carbon-phosphorus lyase; C418233:2-amino-3-(3-hydrox-5(2-methyl-2H-tetrazol-5-yl)isoxazol-4-yl)propionic acid