title: Polymerase chain reaction in the detection of Helicobacter pylori infection.
abstract: OBJECTIVE
  To determine the presence of Helicobacter pylori (H. pylori) infection, in patients suffering from gastritis and peptic ulcer disease by polymerase chain reaction (PCR) and correlate the results with the histological diagnosis.
  
  
  METHODS
  Analytical, comparative study.
  
  
  METHODS
  Section of Gastroenterology, Department of Medicine and Pathology, Aga Khan University Hospital and School of Life Sciences and Chemical Technology, Ngee Ann Polytechnic, Singapore from November, 2001 to December, 2002.
  
  
  METHODS
  Gastric antral biopsies were obtained from 64 patients attending the Gastroenterology Section of Aga Khan University Hospital. Patients on nonsteroidal-anti-inflammatory drugs (NSAIDS) were excluded. Gastric biopsies were sent for histopathology and used for DNA extraction and PCR amplification of H. pylori 16S ribosomal RNA (rRNA) gene. Results were compared and statistically analyzed.
  
  
  RESULTS
  H. pylori were not visible by histology in 57.6 % (34/59) and could be seen in 42.4 % (25/59). PCR test was negative for H. pylori DNA in 44.1 % (26/59) and positive in 55.9 % (33/59) with p<0.001.
  
  
  CONCLUSIONS
  PCR H. pylori DNA is a sensitive method for the diagnosis of H. pylori infection and its use as a diagnostic tool along with histology increases the detection rate of H. pylori infection. Two different staining methods for the organism should be used to avoid missing diagnosis of H. pylori infection.
authors.affiliation: Department of Medicine, Aga Khan University Hospital, Karachi - 74800. yakoobjaved@hotmail.com
authors.forename: Javed
authors.initials: J
authors.lastname: Yakoob
authors.forename: Nadim
authors.initials: N
authors.lastname: Jafri
authors.forename: Wasim
authors.initials: W
authors.lastname: Jafri
authors.forename: Sara
authors.initials: S
authors.lastname: Zaman
authors.forename: Lim Chuan
authors.initials: LC
authors.lastname: Bian
authors.forename: Muhammad
authors.initials: M
authors.lastname: Islam
authors.forename: Akbar S
authors.initials: AS
authors.lastname: Hussainy
authors.forename: Viqar
authors.initials: V
authors.lastname: Zaman
mesh_terms: D000328:Adult; D000368:Aged; D000369:Aged, 80 and over; D005260:Female; D005756:Gastritis / Q000382:microbiology; D016481:Helicobacter Infections / Q000175:diagnosis*; D016480:Helicobacter pylori / Q000235:genetics / Q000302:isolation & purification; D006801:Humans; D008297:Male; D008875:Middle Aged; D010437:Peptic Ulcer / Q000382:microbiology; D016133:Polymerase Chain Reaction; D012329:RNA, Bacterial / Q000032:analysis; D012680:Sensitivity and Specificity
chemical_list: D012329:RNA, Bacterial