title: ILM: a web server for predicting RNA secondary structures with pseudoknots.
abstract: The ILM web server provides a web interface to two algorithms, iterated loop matching and maximum weighted matching, for efficiently predicting RNA secondary structures with pseudoknots. The algorithms can utilize either thermodynamic or comparative information or both, and thus can work on both aligned and individual sequences. Predicted secondary structures are presented in several formats compatible with a variety of existing visualization tools. The service can be accessed at http://cic.cs.wustl.edu/RNA/.
authors.affiliation: Department of Computer Science and Engineering, Washington University in St Louis, St Louis, MO 63130, USA.
authors.forename: Jianhua
authors.initials: J
authors.lastname: Ruan
authors.forename: Gary D
authors.initials: GD
authors.lastname: Stormo
authors.forename: Weixiong
authors.initials: W
authors.lastname: Zhang
mesh_terms: D000465:Algorithms; D020407:Internet; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry*; D017423:Sequence Analysis, RNA; D012984:Software; D014584:User-Computer Interface
chemical_list: D012313:RNA