title: The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update.
abstract: In this report, we provide an update on the services and content which are available on the web server of IBM's Bioinformatics and Pattern Discovery group. The server, which is operational around the clock, provides access to a large number of methods that have been developed and published by the group's members. There is an increasing number of problems that these tools can help tackle; these problems range from the discovery of patterns in streams of events and the computation of multiple sequence alignments, to the discovery of genes in nucleic acid sequences, the identification--directly from sequence--of structural deviations from alpha-helicity and the annotation of amino acid sequences for antimicrobial activity. Additionally, annotations for more than 130 archaeal, bacterial, eukaryotic and viral genomes are now available on-line and can be searched interactively. The tools and code bundles continue to be accessible from http://cbcsrv.watson.ibm.com/Tspd.html whereas the genomics annotations are available at http://cbcsrv.watson.ibm.com/Annotations/.
authors.affiliation: Bioinformatics and Pattern Discovery group, IBM T.J. Watson Research Center, PO Box 218, Yorktown Heights, NY 10598, USA.
authors.forename: Tien
authors.initials: T
authors.lastname: Huynh
authors.forename: Isidore
authors.initials: I
authors.lastname: Rigoutsos
mesh_terms: D000890:Anti-Infective Agents / Q000737:chemistry; D019295:Computational Biology; D030541:Databases, Genetic; D015870:Gene Expression; D016678:Genome; D020407:Internet; D010455:Peptides / Q000737:chemistry; D017433:Protein Structure, Secondary; D011506:Proteins / Q000737:chemistry; D017421:Sequence Analysis; D012984:Software
chemical_list: D000890:Anti-Infective Agents; D010455:Peptides; D011506:Proteins