title: Molecular phylogeny of Trichomonadidae family inferred from ITS-1, 5.8S rRNA and ITS-2 sequences.
abstract: The Trichomonads have been the subject of several molecular studies that reported some discrepancies both at the lower and higher taxonomic levels. The purpose of this study was to make an extensive phylogenetic analysis of the Trichomonadidae using ITS-1/5.8S/ITS-2 sequences, to better understand its phylogeny and the usefulness of this marker. ITS-1/5.8S/ITS-2 sequences of 36 strains from 14 species belonging to Trichomonadidae and Monocercomonadidae were analysed, in which 20 were newly determined. Maximum likelihood, maximum parsimony, neighbour joining, and Bayesian phylogenetic methods were employed in order to reconstruct and compare the evolutionary history of this group. Tetratrichomonas gallinarum and four strains of Tetratrichomonas sp. isolated from bull genital organs were found closely related, confirming the classification of the latter, probably as a new species. The monophyly of Tritrichomonadinae and Trichomonadinae subfamilies were corroborated, with the exclusion of Trichomitus batrachorum from the latter since it grouped consistently with Hypotrichomonas acosta. Tritrichomonas foetus, Tritrichomonas suis and potentially also Tritrichomonas mobilensis seemed to correspond to the same species. Monocercomonas sp. and Ditrichomonas honigbergii emerged as independent lineages, with their phylogenetic positions undetermined. Neither Trichomonadidae nor Monocercomonadidae were supported as monophyletic groups. The ITS-1/5.8S/ITS-2 seems to be a reliable locus for phylogenetic studies in the Trichomonadida, mainly at lower taxonomic levels, and at least up to the family level.
authors.affiliation: Centro de Biologia Genômica e Molecular, Pontifícia Universidade Católica do Rio Grande do Sul (PUCRS), Porto Alegre, RS, Brazil.
authors.forename: Peter
authors.initials: P
authors.lastname: Kleina
authors.forename: Josiane
authors.initials: J
authors.lastname: Bettim-Bandinelli
authors.forename: Sandro Luís
authors.initials: SL
authors.lastname: Bonatto
authors.forename: Marlene
authors.initials: M
authors.lastname: Benchimol
authors.forename: Maurício Reis
authors.initials: MR
authors.lastname: Bogo
mesh_terms: D000818:Animals; D021901:DNA, Intergenic / Q000235:genetics; D016054:DNA, Protozoan / Q000235:genetics; D019143:Evolution, Molecular; D005784:Gene Amplification / Q000235:genetics; D005819:Genetic Markers / Q000235:genetics; D014644:Genetic Variation / Q000235:genetics; D010802:Phylogeny; D016053:RNA, Protozoan / Q000235:genetics*; D012335:RNA, Ribosomal / Q000235:genetics*; D017421:Sequence Analysis / Q000379:methods; D016834:Trichomonadida / Q000145:classification* / Q000235:genetics; D014244:Trichomonas / Q000145:classification / Q000235:genetics
chemical_list: D021901:DNA, Intergenic; D016054:DNA, Protozoan; D005819:Genetic Markers; D016053:RNA, Protozoan; D012335:RNA, Ribosomal