Effect of methylation on the stability and solvation free energy of amylose and cellulose fragments: a molecular dynamics study.
Molecular dynamics (MD) simulations were used to study the stability and solvation of amylose and cellulose fragments. The recently developed gromos carbohydrate force field was further tested by simulating maltose, cellobiose, and maltoheptaose. The MD simulations reproduced fairly well the favorable conformations of disaccharides defined by the torsional angles related with the glycosidic bond and the radius gyration of maltoheptaose. The effects of methylation at different hydroxyl groups on the stability of amylose and cellulose fragments were investigated. The methylations of O-2 and O-3 reduce the stability of a single helix more than methylation at O-6, while the latter reduces the stability of a double helix more. Solvation free-energy differences between the unsubstituted amylose and cellulose fragments and the methylated species were studied using the single-step perturbation method. It was found that methylation at O-2 has the biggest effect, in agreement with experiment.
Yu
Haibo
H
Laboratory of Physical Chemistry, Swiss Federal Institute of Technology Zürich, ETH Hönggerberg, 8093 Zürich, Switzerland.
Amann
Manfred
M
Hansson
Tomas
T
Köhler
Jutta
J
Wich
Günter
G
van Gunsteren
Wilfred F
WF
D000465:Algorithms; D000688:Amylose / Q000737:chemistry*; D002236:Carbohydrate Conformation; D002241:Carbohydrates / Q000737:chemistry*; D002475:Cellobiose / Q000737:chemistry; D002482:Cellulose / Q000737:chemistry*; D003198:Computer Simulation; D005936:Glucans / Q000737:chemistry; D006027:Glycosides / Q000737:chemistry; D008320:Maltose / Q000737:chemistry; D008745:Methylation; D011134:Polysaccharides / Q000737:chemistry; D012984:Software; D013816:Thermodynamics; D013997:Time Factors
D002241:Carbohydrates; D005936:Glucans; D006027:Glycosides; D011134:Polysaccharides; D002475:Cellobiose; C031146:maltoheptaose; D008320:Maltose; D002482:Cellulose; D000688:Amylose