title: Phylogenetic analysis of protozoa in the rumen contents of cow based on the 18S rDNA sequences.
abstract: OBJECTIVE
  To examine the diversity of protozoa in the rumen contents of cow.
  
  
  RESULTS
  Protozoa that inhabit the rumen were detected by PCR using protozoan-specific primers. Libraries of protozoan rDNA sequences were constructed from rumen fluid, solid tissues and epithelium. Twenty-three clones isolated from rumen fluid fell into two genera identified as Entodinium (69.6% of clones) and Epidinium (31.4% of clones). Of the clones isolated from rumen fluid, a moderate number were unidentifiable (30.4%).
  
  
  CONCLUSIONS
  The predominant protozoan genus identified in the whole rumen belonged to the Entodinium group (81.1%). Protozoa were not detected in the rumen epithelium.
  
  
  CONCLUSIONS
  These findings suggest that rumen fluid and solid tissues contain different protozoan populations that may play specific roles in rumen function. Quantitative PCR techniques and a more specific set of phylogenetic probes that distinguish between protozoan species are needed to determine the significance of newly identified groups and to determine the distribution of identified protozoan clusters in rumen microbial communities.
authors.affiliation: Division of Applied Life Science, Gyeongsang National University, Chinju, South Korea.
authors.forename: E C
authors.initials: EC
authors.lastname: Shin
authors.forename: K M
authors.initials: KM
authors.lastname: Cho
authors.forename: W J
authors.initials: WJ
authors.lastname: Lim
authors.forename: S Y
authors.initials: SY
authors.lastname: Hong
authors.forename: C L
authors.initials: CL
authors.lastname: An
authors.forename: E J
authors.initials: EJ
authors.lastname: Kim
authors.forename: Y K
authors.initials: YK
authors.lastname: Kim
authors.forename: B R
authors.initials: BR
authors.lastname: Choi
authors.forename: J M
authors.initials: JM
authors.lastname: An
authors.forename: J M
authors.initials: JM
authors.lastname: Kang
authors.forename: H
authors.initials: H
authors.lastname: Kim
authors.forename: H D
authors.initials: HD
authors.lastname: Yun
mesh_terms: D000818:Animals; D001483:Base Sequence; D002417:Cattle; D003001:Cloning, Molecular / Q000379:methods; D016054:DNA, Protozoan / Q000235:genetics*; D004275:DNA, Ribosomal / Q000235:genetics*; D056890:Eukaryota / Q000235:genetics*; D014644:Genetic Variation / Q000235:genetics; D010802:Phylogeny; D012417:Rumen / Q000469:parasitology*
chemical_list: D016054:DNA, Protozoan; D004275:DNA, Ribosomal