SARGE: a tool for creation of putative genetic networks.
CONCLUSIONS
SARGE is a tool for creating, visualizing and manipulating a putative genetic network from time series microarray data. The tool assigns potential edges through time-lagged correlation, incorporates a clustering mechanism, an interactive visual graph representation and employs simulated annealing for network optimization.


BACKGROUND
The application is available as a .jar file from http://www.bioinformatics.cs.ncl.ac.uk/sarge/index.html.
Shaw
O J
OJ
School of Computing Science, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, UK.
Harwood
C
C
Steggles
L J
LJ
Wipat
A
A
D000465:Algorithms; D020869:Gene Expression Profiling / Q000379:methods*; D005786:Gene Expression Regulation / Q000502:physiology*; D008957:Models, Genetic; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D010363:Pattern Recognition, Automated / Q000379:methods; D015398:Signal Transduction / Q000502:physiology*; D012984:Software; D014584:User-Computer Interface