title: Marsupial MHC class II beta genes are not orthologous to the eutherian beta gene families.
abstract: The major histocompatibility complex (MHC) class II DRB, DQB, DPB, and DOB gene clusters are shared by different eutherian orders. Such an orthologous relationship is not seen between the beta genes of birds and eutherians. A high degree of uncertainty surrounds the evolutionary relationship of marsupial class II beta sequences with eutherian beta gene families. In particular, it has been suggested that marsupials utilize the DRB gene cluster. A cDNA encoding an MHC class II beta molecule was isolated from a brushtail possum mesenteric lymph node cDNA library. This clone is most similar to Macropus rufogriseus DBB. Our analysis suggests that all known marsupial beta-chain genes, excluding DMB, fall into two separate clades, which are distinct from the eutherian DRB, DQB, DPB, or DOB gene clusters. We recommend that the DAB and DBB nomenclature be reinstated. DAB and DBB orthologs are not present in eutherians. It appears that the marsupial and eutherian lineages have retained different gene clusters following gene duplication events early in mammalian evolution.
authors.affiliation: Evolutionary Biology Unit, Australian Museum, 6 College St., Sydney, NSW 2010, Australia. kathyb@austmus.gov.au
authors.forename: K
authors.initials: K
authors.lastname: Belov
authors.forename: M K-P
authors.initials: MK
authors.lastname: Lam
authors.forename: D J
authors.initials: DJ
authors.lastname: Colgan
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D017931:DNA Primers; D019143:Evolution, Molecular; D015723:Gene Library; D005802:Genes, MHC Class II / Q000235:genetics*; D016013:Likelihood Functions; D008394:Marsupialia / Q000235:genetics*; D008957:Models, Genetic; D008969:Molecular Sequence Data; D010802:Phylogeny; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA
chemical_list: D017931:DNA Primers