Identification of the bacterial endosymbionts of the marine ciliate Euplotes magnicirratus (Ciliophora, Hypotrichia) and proposal of 'Candidatus Devosia euplotis'.
This paper reports the identification of bacterial endosymbionts that inhabit the cytoplasm of the marine ciliated protozoon Euplotes magnicirratus. Ultrastructural and full-cycle rRNA approaches were used to reveal the identity of these bacteria. Based on analysis of 16S rRNA gene sequences, evolutionary trees were constructed; these placed the endosymbiont in the genus Devosia in the alpha-Proteobacteria. The validity of this finding was also shown by fluorescence in situ hybridization with a Devosia-specific oligonucleotide probe. Differences at the 16S rRNA gene level (which allowed the construction of a species-specific oligonucleotide probe) and the peculiar habitat indicate that the endosymbiont represents a novel species. As its cultivation has not been successful to date, the provisional name 'Candidatus Devosia euplotis' is proposed. The species- and group-specific probes designed in this study could represent convenient tools for the detection of 'Candidatus Devosia euplotis' and Devosia-like bacteria in the environment.
Vannini
Claudia
C
Dipartimento di Etologia, Ecologia, Evoluzione dell'Università di Pisa, Pisa, Italy.
Rosati
Giovanna
G
Dipartimento di Etologia, Ecologia, Evoluzione dell'Università di Pisa, Pisa, Italy.
Verni
Franco
F
Dipartimento di Etologia, Ecologia, Evoluzione dell'Università di Pisa, Pisa, Italy.
Petroni
Giulio
G
Dipartimento di Etologia, Ecologia, Evoluzione dell'Università di Pisa, Pisa, Italy.
D000818:Animals; D003593:Cytoplasm / Q000382:microbiology; D015342:DNA Probes; D004269:DNA, Bacterial / Q000737:chemistry / Q000302:isolation & purification; D004275:DNA, Ribosomal / Q000737:chemistry; D016812:Euplotes / Q000382:microbiology* / Q000648:ultrastructure; D020459:Genes, rRNA; D041921:Hyphomicrobiaceae / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification* / Q000502:physiology; D017404:In Situ Hybridization, Fluorescence; D008969:Molecular Sequence Data; D010802:Phylogeny; D012329:RNA, Bacterial / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012623:Seawater / Q000382:microbiology; D012680:Sensitivity and Specificity; D017422:Sequence Analysis, DNA; D017385:Sequence Homology; D013559:Symbiosis; D014617:Vacuoles / Q000382:microbiology; D014871:Water Microbiology
D015342:DNA Probes; D004269:DNA, Bacterial; D004275:DNA, Ribosomal; D012329:RNA, Bacterial; D012336:RNA, Ribosomal, 16S