the JigCell model builder and run manager.
CONCLUSIONS
We describe the JigCell Model Builder (JCMB), a tool for creating biochemical reaction network models. JCMB is designed for ease of use and its interface uses the standard spreadsheet metaphor. The JigCell Run Manager (JCRM) is a tool for organizing the large collections of simulation runs typically required by reaction network modeling activities.


BACKGROUND
JCMB and JCRM are part of the JigCell suite available at http://jigcell.biol.vt.edu.
Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061-0106, USA.
Marc
M
Vass
Nicholas
N
Allen
Clifford A
CA
Shaffer
Naren
N
Ramakrishnan
Layne T
LT
Watson
John J
JJ
Tyson
D000818:Animals; D003198:Computer Simulation; D003628:Database Management Systems; D005786:Gene Expression Regulation / Q000502:physiology*; D006801:Humans; D016247:Information Storage and Retrieval / Q000379:methods*; D008954:Models, Biological; D015398:Signal Transduction / Q000502:physiology*; D012984:Software; D014584:User-Computer Interface