Isothermal multiple displacement amplification: a highly reliable approach for generating unlimited high molecular weight genomic DNA from clinical specimens.
Isothermal multiple strand displacement amplification (IMDA) of the whole human genome is a promising method for procuring abundant DNA from valuable and often limited clinical specimens. However, whether DNA generated by this method is of high quality and a faithful replication of the DNA in the original specimen, allowing for subsequent molecular diagnostic testing, requires verification. In this study, we evaluated the suitability of IMDA-generated DNA (IMDA-DNA) for detecting antigen receptor gene rearrangements, chromosomal translocations, and gene mutations using Southern blot analysis, polymerase chain reaction (PCR) methods, or sequencing methods in 28 lymphoma and leukemia clinical specimens. Molecular testing before and after whole genome amplification of these specimens using the IMDA technique showed concordance in 27 of 28 (96%) specimens. Analysis of IMDA-DNA by Southern blot analysis detected restriction fragments >12 kilobases long. No amplification bias was observed at all loci tested demonstrating that this method can be useful in generating large amounts of unbiased, high molecular weight DNA from limited clinical specimens.
Luthra
Rajyalakshmi
R
The University of Texas M.D. Anderson Cancer Center, NA01.091, 8515 Fannin Street, Houston, TX 77054, USA. rluthra@mdanderson.org
Medeiros
L Jeffrey
LJ
D004252:DNA Mutational Analysis / Q000379:methods*; D015329:Gene Rearrangement, T-Lymphocyte / Q000235:genetics; D011905:Genes, ras / Q000235:genetics; D023281:Genomics / Q000379:methods; D006801:Humans; D007938:Leukemia / Q000175:diagnosis*; D008223:Lymphoma / Q000175:diagnosis*; D025202:Molecular Diagnostic Techniques; D009154:Mutation / Q000235:genetics; D016133:Polymerase Chain Reaction / Q000379:methods; D011518:Proto-Oncogene Proteins / Q000235:genetics; D020794:Receptor Protein-Tyrosine Kinases / Q000235:genetics; D014764:Viral Proteins / Q000737:chemistry; D051941:fms-Like Tyrosine Kinase 3
D011518:Proto-Oncogene Proteins; D014764:Viral Proteins; C040784:terminal protein, Bacillus phage phi29; C497970:FLT3 protein, human; D020794:Receptor Protein-Tyrosine Kinases; D051941:fms-Like Tyrosine Kinase 3