Circular dichroism of carotenoids in bacterial light-harvesting complexes: experiments and modeling.
In this work we investigate the origin and characteristics of the circular dichroism (CD) spectrum of rhodopin glucoside and lycopene in the light-harvesting 2 complex of Rhodopseudomonas acidophila and Rhodospirillum molischianum, respectively. We successfully model their absorption and CD spectra based on the high-resolution structures. We assume that these spectra originate from seven interacting transition dipole moments: the first corresponds to the 0-0 transition of the carotenoid, whereas the remaining six represent higher vibronic components of the S2 state. From the absorption spectra we get an estimate of the Franck-Condon factors of these transitions. Furthermore, we investigate the broadening mechanisms that lead to the final shape of the spectra and get an insight into the interaction energy between carotenoids. Finally, we examine the consequences of rotations of the carotenoid transition dipole moment and of deformations in the light-harvesting 2 complex rings. Comparison of the modeled carotenoid spectra with modeled spectra of the bacteriochlorophyll QY region leads to a refinement of the modeling procedure and an improvement of all calculated results. We therefore propose that the combined carotenoid and bacteriochlorophyll CD can be used as an accurate reflection of the overall structure of the light-harvesting complexes.
Department of Biophysics and Physics of Complex Systems, Vrije Universiteit, 1081 HV Amsterdam, The Netherlands.
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S
Georgakopoulou
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R
van Grondelle
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G
van der Zwan
D002338:Carotenoids / Q000737:chemistry* / Q000528:radiation effects; D002942:Circular Dichroism / Q000379:methods; D003198:Computer Simulation; D004735:Energy Transfer / Q000528:radiation effects; D008027:Light; D045342:Light-Harvesting Protein Complexes / Q000737:chemistry* / Q000528:radiation effects; D008956:Models, Chemical; D008958:Models, Molecular; D045332:Photosystem II Protein Complex / Q000737:chemistry* / Q000528:radiation effects; D011487:Protein Conformation / Q000528:radiation effects; D012241:Rhodopseudomonas / Q000378:metabolism* / Q000528:radiation effects; D012246:Rhodospirillum / Q000378:metabolism* / Q000528:radiation effects
D045342:Light-Harvesting Protein Complexes; D045332:Photosystem II Protein Complex; D002338:Carotenoids