Polymorphisms and intronic structures in the 18S subunit ribosomal RNA gene of the fungi Scytalidium dimidiatum and Scytalidium hyalinum. Evidence of an IC1 intron with an His-Cys endonuclease gene.
The fungi Scytalidium dimidiatum (Nattrassia mangiferae synanamorph) and Scytalidium hyalinum are mainly encountered in (sub)tropical areas as plant pathogens and agents of human dermatomycosis. Because the classification and differentiation of these two species is unclear, we studied 22 S. dimidiatum and 15 S. hyalinum isolates in order to identify potential species-specific insertions and polymorphisms in the 18S subunit ribosomal gene. The presence of an IE intron in S. dimidiatum, together with a single polymorphism (A in S. dimidiatum, G in S. hyalinum) in the coding region, allowed us to differentiate these two species in most cases. Moreover, in one S. dimidiatum isolate we found a group IC1 intron containing a putative truncated His-Cys endonuclease gene. This enzyme shows strong similarity to the intronic homing endonuclease of Physarum polycephalum. Based on these results and our previous findings, we propose an evolutionary pathway for 18S rDNA S. dimidiatum insertions, implying independent events.
Machouart
M
M
Laboratoire de Parasitologie-Mycologie, UFR Lariboisière, Saint-Louis-Université Paris 7, Faculté de Médecine, 15 rue de l'école de médecine, 75006 Paris, France. m.machouart@tiscali.fr
Lacroix
C
C
Bui
H
H
Feuilhade de Chauvin
M
M
Derouin
F
F
Lorenzo
F
F
D001203:Ascomycota / Q000145:classification / Q000235:genetics*; D003850:Deoxyribonuclease I / Q000235:genetics* / Q000378:metabolism; D020459:Genes, rRNA; D007438:Introns / Q000235:genetics*; D008969:Molecular Sequence Data; D010802:Phylogeny; D011110:Polymorphism, Genetic; D012337:RNA, Ribosomal, 18S / Q000235:genetics*
D012337:RNA, Ribosomal, 18S; D003850:Deoxyribonuclease I