title: Identification of genes differentially expressed in human hepatocellular carcinoma by a modified suppression subtractive hybridization method.
abstract: To identify differentially expressed genes in human HCC in China, we applied a modified SSH method for cDNA subtraction. Such modification has made the method more effective for subtraction. We have obtained 36 and 24 differentially expressed cDNA fragments after modified SSH from 4 paired samples of human HCC and non-HCC tissues, respectively. Reverse Northern blotting analysis was performed to further identify the genes differentially expressed in the HCC and non-HCC tissue samples. There were 25 genes really overexpressed in HCC, and their corresponding encoding molecules may reflect the events of cell accelerated metabolism, proliferation, angiogenesis, anti-apoptosis, tumorigenesis (TLH107, TFH9) and the potential for metastasis. Of the 25 genes overexpressed in HCC, 5 were novel and their full-length cDNAs were cloned. These 5 novel genes are functionally associated with the occurrence and development of HCC according to the Database analysis. In the paired non-HCC tissues, there were 15 genes lowly or not expressed in HCC, and their encoding proteins function as tumor suppressors (TFA3, TFA11), acute-phase reactive proteins, and the blood plasma proteins that are mainly or exclusively synthesized in the liver. The distinct profiles of the differentially expressed genes in HCC and the paired non-HCC tissues have partially reflected the genetic alterations during HCC tumorigenesis. The novel HCC-specific gene TLH6 and the CT antigen encoding gene TLH107 may have diagnostic and therapeutic potentials in HCC and/or other solid cancers.
authors.affiliation: Department of Immunology, School of Basic Medical Science, Peking University Health Science Center, Beijing, China.
authors.forename: Xue-Yuan
authors.initials: XY
authors.lastname: Dong
authors.forename: Xue-Wen
authors.initials: XW
authors.lastname: Pang
authors.forename: Song-Tao
authors.initials: ST
authors.lastname: Yu
authors.forename: Yan-Rong
authors.initials: YR
authors.lastname: Su
authors.forename: Hong-Chen
authors.initials: HC
authors.lastname: Wang
authors.forename: Yan-Hui
authors.initials: YH
authors.lastname: Yin
authors.forename: Yue-Dan
authors.initials: YD
authors.lastname: Wang
authors.forename: Wei-Feng
authors.initials: WF
authors.lastname: Chen
mesh_terms: D000209:Acute-Phase Proteins / Q000096:biosynthesis; D001798:Blood Proteins / Q000096:biosynthesis; D015152:Blotting, Northern; D006528:Carcinoma, Hepatocellular / Q000235:genetics* / Q000473:pathology; D020869:Gene Expression Profiling; D015972:Gene Expression Regulation, Neoplastic; D006801:Humans; D017403:In Situ Hybridization; D008113:Liver Neoplasms / Q000235:genetics* / Q000473:pathology; D020411:Oligonucleotide Array Sequence Analysis; D025521:Tumor Suppressor Proteins / Q000096:biosynthesis
chemical_list: D000209:Acute-Phase Proteins; D001798:Blood Proteins; D025521:Tumor Suppressor Proteins