title: Phylogenetic relationship of Fusarium langsethiae to Fusarium poae and Fusarium sporotrichioides as inferred by IGS, ITS, beta-tubulin sequences and UP-PCR hybridization analysis.
abstract: Fusarium langsethiae was recently described to accommodate "powdery" isolates of Fusarium poae, which morphologically resemble F. poae, but whose metabolite profile is similar to that of Fusarium sporotrichioides. In order to investigate the phylogenetic relationship of F. langsethiae to closely related species, we sequenced the internal transcribed spacer (ITS) regions 1 and 2 and part of the intergenic spacer (IGS) region of the rDNA cluster and part of the beta-tubulin gene from 109 strains of F. poae, F. sporotrichioides, F. langsethiae and Fusarium kyushuense from different geographic origin. Sequence analysis of ITS1 and 2 was unable to separate all F. sporotrichioides strains from F. langsethiae strains. Sequence analysis of beta-tubulin distinguished all four species, but it did not resolve the phylogenetic relationship between these two species. Sequence analysis of the IGS region distinguished the four species and led to a higher number of subgroups of the individual species, of which that of F. sporotrichioides var. minus isolates was even better supported than that of F. poae and F. langsethiae. Neighbor-joining and POY analyses of all combined sequences reliably separated all species studied, including F. langsethiae, clearly from F. sporotrichioides. The high intraspecific variability of the IGS sequences were found useful to group isolates according to their geographic origin. These results are in accordance with the results of the UP-PCR hybridization analysis. In summary, our data offer molecular support for the description of F. langsethiae as a new species in section Sporotrichiella.
authors.affiliation: Laboratory of Plant Physiology and Molecular Biology, Department of Biology, University of Turku, FIN-20014 Turku, Finland. tymat@utu.fi
authors.forename: T
authors.initials: T
authors.lastname: Yli-Mattila
authors.forename: R L
authors.initials: RL
authors.lastname: Mach
authors.forename: I A
authors.initials: IA
authors.lastname: Alekhina
authors.forename: S A
authors.initials: SA
authors.lastname: Bulat
authors.forename: S
authors.initials: S
authors.lastname: Koskinen
authors.forename: C M
authors.initials: CM
authors.lastname: Kullnig-Gradinger
authors.forename: C P
authors.initials: CP
authors.lastname: Kubicek
authors.forename: S S
authors.initials: SS
authors.lastname: Klemsdal
mesh_terms: D001483:Base Sequence; D004271:DNA, Fungal / Q000737:chemistry / Q000302:isolation & purification; D004275:DNA, Ribosomal / Q000737:chemistry / Q000302:isolation & purification; D021903:DNA, Ribosomal Spacer / Q000737:chemistry / Q000302:isolation & purification; D005656:Fungal Proteins / Q000235:genetics; D005670:Fusarium / Q000145:classification* / Q000235:genetics*; D005800:Genes, Fungal; D014644:Genetic Variation; D010802:Phylogeny; D012680:Sensitivity and Specificity; D016415:Sequence Alignment; D013045:Species Specificity; D014404:Tubulin / Q000737:chemistry / Q000235:genetics / Q000302:isolation & purification
chemical_list: D004271:DNA, Fungal; D004275:DNA, Ribosomal; D021903:DNA, Ribosomal Spacer; D005656:Fungal Proteins; D014404:Tubulin