title: Chloroethylnitrosourea-derived ethano cytosine and adenine adducts are substrates for Escherichia coli glycosylases excising analogous etheno adducts.
abstract: Exocyclic ethano DNA adducts are saturated etheno ring derivatives formed mainly by therapeutic chloroethylnitrosoureas (CNUs), which are also mutagenic and carcinogenic. In this work, we report that two of the ethano adducts, 3,N4-ethanocytosine (EC) and 1,N6-ethanoadenine (EA), are novel substrates for the Escherichia coli mismatch-specific uracil-DNA glycosylase (Mug) and 3-methyladenine DNA glycosylase II (AlkA), respectively. It has been shown previously that Mug excises 3,N4-ethenocytosine (epsilonC) and AlkA releases 1,N6-ethenoadenine (epsilonA). Using synthetic oligonucleotides containing a single ethano or etheno adduct, we found that both glycosylases had a approximately 20-fold lower excision activity toward EC or EA than that toward their structurally analogous epsilonC or epsilonA adduct. Both enzymes were capable of excising the ethano base paired with any of the four natural bases, but with varying efficiencies. The Mug activity toward EC could be stimulated by E. coli endonuclease IV and, more efficiently, by exonuclease III. Molecular dynamics (MD) simulations showed similar structural features of the etheno and ethano derivatives when present in DNA duplexes. However, also as shown by MD, the stacking interaction between the EC base and Phe 30 in the Mug active site is reduced as compared to the epsilonC base, which could account for the lower EC activity observed in this study.
authors.affiliation: Life Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA.
authors.forename: Anton B
authors.initials: AB
authors.lastname: Guliaev
authors.forename: B
authors.initials: B
authors.lastname: Singer
authors.forename: Bo
authors.initials: B
authors.lastname: Hang
mesh_terms: D000225:Adenine / Q000031:analogs & derivatives / Q000737:chemistry / Q000378:metabolism; D020137:Base Pair Mismatch; D001665:Binding Sites; D003596:Cytosine / Q000031:analogs & derivatives* / Q000737:chemistry / Q000378:metabolism*; D018736:DNA Adducts / Q000737:chemistry* / Q000378:metabolism; D045647:DNA Glycosylases / Q000378:metabolism*; D043223:Deoxyribonuclease IV (Phage T4-Induced) / Q000378:metabolism; D004926:Escherichia coli / Q000201:enzymology*; D029968:Escherichia coli Proteins / Q000378:metabolism; D005038:Ethylnitrosourea / Q000031:analogs & derivatives* / Q000494:pharmacology*; D005090:Exodeoxyribonucleases / Q000378:metabolism; D008958:Models, Molecular; D009690:Nucleic Acid Conformation; D011487:Protein Conformation; D013379:Substrate Specificity; D044502:Thymine DNA Glycosylase; D051981:Uracil-DNA Glycosidase
chemical_list: C018289:3,N(4)-ethenocytosine; D018736:DNA Adducts; D029968:Escherichia coli Proteins; C017139:1-(2-chloroethyl)-1-nitrosourea; D003596:Cytosine; D005090:Exodeoxyribonucleases; C020133:exodeoxyribonuclease III; D043223:Deoxyribonuclease IV (Phage T4-Induced); C468972:endonuclease IV, E coli; D045647:DNA Glycosylases; D044502:Thymine DNA Glycosylase; D051981:Uracil-DNA Glycosidase; C076131:DNA-3-methyladenine glycosidase II; D000225:Adenine; D005038:Ethylnitrosourea