title: tPatternHunter: gapped, fast and sensitive translated homology search.
abstract: New ideas, spaced seeds and gapped alignment before 6-frame translation are implemented for translated homology search in tPatternHunter. The new software compares favorably with tBLASTx.
  
  
  BACKGROUND
  The software is free to academics at http://www.bioinformaticssolutions.com/downloads/ph-academic/
  
  
  BACKGROUND
  bma@csd.uwo.ca.
authors.affiliation: Bioinformatics Solutions Inc. 145 Columbia St West, Waterloo, Ontario, Canada N2L 3L2.
authors.forename: Derek
authors.initials: D
authors.lastname: Kisman
authors.forename: Ming
authors.initials: M
authors.lastname: Li
authors.forename: Bin
authors.initials: B
authors.lastname: Ma
authors.forename: Li
authors.initials: L
authors.lastname: Wang
mesh_terms: D000465:Algorithms; D017124:Conserved Sequence; D014176:Protein Biosynthesis / Q000235:genetics*; D016415:Sequence Alignment / Q000379:methods*; D017421:Sequence Analysis / Q000379:methods*; D017385:Sequence Homology; D012984:Software