Representing bioinformatics causality.
This paper reviews a variety of different graphical notations currently in active use for modelling dynamic processes in bioinformatics and biotechnology, and crystallises from these notations a set of properties essential to any proposal for a modelling language seeking to provide an adequate systemic description of biological processes.
Mandel
Johannes
J
Dept. of Biotechnology & Bioinformatics, Weihenstephan University of Applied Sciences, Freising, Germany. johannes.mandel@fh-weihenstephan.de
Palfreyman
Niall M
NM
Lopez
Jesus A
JA
Dubitzky
Werner
W
D000465:Algorithms; D000818:Animals; D015984:Causality; D002468:Cell Physiological Phenomena; D019295:Computational Biology / Q000379:methods / Q000639:trends; D003196:Computer Graphics; D004926:Escherichia coli / Q000201:enzymology / Q000235:genetics; D005786:Gene Expression Regulation / Q000502:physiology*; D006801:Humans; D007763:Lac Operon / Q000235:genetics; D008954:Models, Biological; D015398:Signal Transduction / Q000502:physiology*; D012984:Software; D049490:Systems Biology / Q000379:methods / Q000639:trends; D013598:Systems Theory; D014584:User-Computer Interface; D001616:beta-Galactosidase / Q000235:genetics / Q000378:metabolism
D001616:beta-Galactosidase