title: Phylogenetic study on Shiraia bambusicola by rDNA sequence analyses.
abstract: In this study, 18S rDNA and ITS-5.8S rDNA regions of four Shiraia bambusicola isolates collected from different species of bamboos were amplified by PCR with universal primer pairs NS1/NS8 and ITS5/ITS4, respectively, and sequenced. Phylogenetic analyses were conducted on three selected datasets of rDNA sequences. Maximum parsimony, distance and maximum likelihood criteria were used to infer trees. Morphological characteristics were also observed. The positioning of Shiraia in the order Pleosporales was well supported by bootstrap, which agreed with the placement by Amano (1980) according to their morphology. We did not find significant inter-hostal differences among these four isolates from different species of bamboos. From the results of analyses and comparison of their rDNA sequences, we conclude that Shiraia should be classified into Pleosporales as Amano (1980) proposed and suggest that it might be positioned in the family Phaeosphaeriaceae.
authors.affiliation: College of Life Sciences, Zhejiang University, Hangzhou 310029, China.
authors.forename: Tian-Fan
authors.initials: TF
authors.lastname: Cheng
authors.forename: Xiao-Ming
authors.initials: XM
authors.lastname: Jia
authors.forename: Xiao-Hang
authors.initials: XH
authors.lastname: Ma
authors.forename: Hai-Ping
authors.initials: HP
authors.lastname: Lin
authors.forename: Yu-Hua
authors.initials: YH
authors.lastname: Zhao
mesh_terms: D001203:Ascomycota / Q000145:classification* / Q000166:cytology / Q000235:genetics* / Q000302:isolation & purification; D004271:DNA, Fungal / Q000737:chemistry / Q000235:genetics; D004275:DNA, Ribosomal / Q000737:chemistry / Q000235:genetics*; D021903:DNA, Ribosomal Spacer / Q000737:chemistry / Q000235:genetics; D020459:Genes, rRNA; D008969:Molecular Sequence Data; D010802:Phylogeny; D012337:RNA, Ribosomal, 18S / Q000235:genetics; D012340:RNA, Ribosomal, 5.8S / Q000235:genetics; D017422:Sequence Analysis, DNA
chemical_list: D004271:DNA, Fungal; D004275:DNA, Ribosomal; D021903:DNA, Ribosomal Spacer; D012337:RNA, Ribosomal, 18S; D012340:RNA, Ribosomal, 5.8S