title: Using exon and intron sequences of the gene Mp20 to resolve basal relationships in Cicindela (Coleoptera:Cicindelidae).
abstract: The genus Cicindela (Coleoptera: Cicindelidae) is a species-rich cosmopolitan group of tiger beetles useful for comparing clade diversification worldwide. Knowledge about relationships of major groups is important for this analysis but basal nodes in Cicindela have been difficult to resolve with standard mtDNA markers. Here we developed the Mp20 gene, a single-copy nuclear marker coding for a muscle-associated protein in insects, for phylogenetic analysis of basal groups of Cicindela. Nearly full-length sequences were obtained for 51 cicindelids, including major taxonomic groups from all continents. Sequences of Mp20 were between 1.2 and 1.7 kb and spanning three introns. Phylogenetic signal of exon and intron sequences was compared with that from four gene regions of mtDNA (COI, COIII, Cytb, 16S rRNA; 2.4 kb total). Because introns differed in length, sequence alignment was conducted using various procedures of phenetic and parsimony-based character coding of indels to assess their phylogenetic information content, but major nodes were recovered consistently. Mp20 sequences contributed two thirds of the total support of the combined analysis, with most signal from the introns. We found major clades of Cicindela to be geographically largely coincident with continental regions, confined to Australasia, the Holarctic, the Indian subcontinent, Africa, and South and Central America. Clock estimates using various maximum-likelihood (ML) branch length calculations resulted in roughly similar divergence times whether Mp20 exon, introns, or mtDNA were used, and they were not greatly affected by different procedures for coding and optimizing indel characters. Based on existing clock calibrations in Cicindela, basal splits of continental lineages occurred in the mid-Miocene, placing the radiation of basal groups of Cicindela to a period when their open-vegetation habitats expanded globally.
authors.affiliation: Department of Entomology, The Natural History Museum, London SW7 5BD, United Kingdom.joap@nhm.ac.uk
authors.forename: Joan
authors.initials: J
authors.lastname: Pons
authors.forename: Timothy
authors.initials: T
authors.lastname: Barraclough
authors.forename: Kosmas
authors.initials: K
authors.lastname: Theodorides
authors.forename: Anabela
authors.initials: A
authors.lastname: Cardoso
authors.forename: Alfried
authors.initials: A
authors.lastname: Vogler
mesh_terms: D000818:Animals; D001483:Base Sequence; D001517:Coleoptera / Q000145:classification* / Q000235:genetics*; D017931:DNA Primers; D004272:DNA, Mitochondrial / Q000235:genetics; D005091:Exons / Q000235:genetics*; D005784:Gene Amplification; D005843:Geography; D007438:Introns / Q000235:genetics*; D010802:Phylogeny
chemical_list: D017931:DNA Primers; D004272:DNA, Mitochondrial