title: Association between gene expression profile and tumor invasion in oral squamous cell carcinoma.
abstract: There are limited studies attempting to correlate the expression changes in oral squamous cell carcinoma with clinically relevant variables. We determined the gene expression profile of 16 tumor and 4 normal tissues from 16 patients by means of Affymetrix Hu133A GeneChips. The hybridized RNA was isolated from cells obtained with laser capture microdissection, then was amplified and labeled using T7 polymerase-based in vitro transcription. The expression of 53 genes was found to differ significantly (33 upregulated, 20 downregulated) in normal versus tumor tissues under two independent statistical methods. The expression changes in four selected genes (LGALS1, MMP1, LAGY, and KRT4) were confirmed with reverse transcriptase polymerase chain reaction. Two-dimensional hierarchical clustering of the 53 genes resulted in the samples clustering according to the extent of tumor infiltration: normal epithelial tissue, tumors less than or equal to 4 cm in dimension, and tumors more than 4 cm in dimension (P = 0.0014). The same pattern of clustering was also observed for the 20 downregulated genes. We did not observe any associations with lymph node metastasis (P = 0.097).
authors.affiliation: Department of Microbiology and Molecular Genetics, University of Medicine and Dentistry of New Jersey-New Jersey Medical School, 185 South Orange Avenue, MSB-F659, Newark, NJ 07103, USA.
authors.forename: Gokce A
authors.initials: GA
authors.lastname: Toruner
authors.forename: Celal
authors.initials: C
authors.lastname: Ulger
authors.forename: Mualla
authors.initials: M
authors.lastname: Alkan
authors.forename: Anthony T
authors.initials: AT
authors.lastname: Galante
authors.forename: Joseph
authors.initials: J
authors.lastname: Rinaggio
authors.forename: Randall
authors.initials: R
authors.lastname: Wilk
authors.forename: Bin
authors.initials: B
authors.lastname: Tian
authors.forename: Patricia
authors.initials: P
authors.lastname: Soteropoulos
authors.forename: Meera R
authors.initials: MR
authors.lastname: Hameed
authors.forename: Marvin N
authors.initials: MN
authors.lastname: Schwalb
authors.forename: James J
authors.initials: JJ
authors.lastname: Dermody
mesh_terms: D000328:Adult; D000368:Aged; D002294:Carcinoma, Squamous Cell / Q000235:genetics* / Q000473:pathology*; D016000:Cluster Analysis; D015536:Down-Regulation; D005260:Female; D020869:Gene Expression Profiling; D015972:Gene Expression Regulation, Neoplastic; D006801:Humans; D008297:Male; D008875:Middle Aged; D009062:Mouth Neoplasms / Q000235:genetics* / Q000473:pathology*; D009361:Neoplasm Invasiveness / Q000235:genetics; D020411:Oligonucleotide Array Sequence Analysis; D020133:Reverse Transcriptase Polymerase Chain Reaction; D015854:Up-Regulation