tPatternHunter: gapped, fast and sensitive translated homology search.
New ideas, spaced seeds and gapped alignment before 6-frame translation are implemented for translated homology search in tPatternHunter. The new software compares favorably with tBLASTx.


BACKGROUND
The software is free to academics at http://www.bioinformaticssolutions.com/downloads/ph-academic/


BACKGROUND
bma@csd.uwo.ca.
Kisman
Derek
D
Bioinformatics Solutions Inc. 145 Columbia St West, Waterloo, Ontario, Canada N2L 3L2.
Li
Ming
M
Ma
Bin
B
Wang
Li
L
D000465:Algorithms; D017124:Conserved Sequence; D014176:Protein Biosynthesis / Q000235:genetics*; D016415:Sequence Alignment / Q000379:methods*; D017421:Sequence Analysis / Q000379:methods*; D017385:Sequence Homology; D012984:Software