title: Comparative analysis of the ribosomal components of the hydrogenosome-containing protist, Trichomonas vaginalis.
abstract: The ribosomes of the amitochondriate but hydrogenosome-containing protist lineage, the trichomonads, have previously been reported to be prokaryotic or primitive eukaryotic, based on evidence that they have a 70S sedimentation coefficient and a small number of proteins, similar to prokaryotic ribosomes. In order to determine whether the components of the trichomonad ribosome indeed differ from those of typical eukaryotic ribosomes, the ribosome of a representative trichomonad, Trichomonas vaginalis, was characterized. The sedimentation coefficient of the T. vaginalis ribosome was smaller than that of Saccharomyces cerevisiae and larger than that of Escherichia coli. Based on two-dimensional PAGE analysis, the number of different ribosomal proteins was estimated to be approximately 80. This number is the same as those obtained for typical eukaryotes (approximately 80) but larger than that of E. coli (approximately 55). N-Terminal amino acid sequencing of 18 protein spots and the complete sequences of 4 ribosomal proteins as deduced from their genes revealed these sequences to display typical eukaryotic features. Phylogenetic analyses of the five ribosomal proteins currently available also clearly confirmed that the T. vaginalis sequences are positioned within a eukaryotic clade. Comparison of deduced secondary structure models of the small and large subunit rRNAs of T. vaginalis with those of other eukaryotes revealed that all helices commonly found in typical eukaryotes are present and conserved in T. vaginalis, while variable regions are shortened or lost. These lines of evidence demonstrate that the T. vaginalis ribosome has no prokaryotic or primitive eukaryotic features but is clearly a typical eukaryotic type.
authors.affiliation: Department of Biosystems Science, Graduate University for Advanced Studies (Sokendai), Hayama, Kanagawa 240-0193, Japan.
authors.forename: Nobuko
authors.initials: N
authors.lastname: Arisue
authors.forename: Yasushi
authors.initials: Y
authors.lastname: Maki
authors.forename: Hideji
authors.initials: H
authors.lastname: Yoshida
authors.forename: Akira
authors.initials: A
authors.lastname: Wada
authors.forename: Lidya B
authors.initials: LB
authors.lastname: Sánchez
authors.forename: Miklós
authors.initials: M
authors.lastname: Müller
authors.forename: Tetsuo
authors.initials: T
authors.lastname: Hashimoto
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D020029:Base Pairing; D001483:Base Sequence; D019295:Computational Biology; D017931:DNA Primers; D004275:DNA, Ribosomal / Q000235:genetics; D015180:Electrophoresis, Gel, Two-Dimensional; D019143:Evolution, Molecular; D016013:Likelihood Functions; D008957:Models, Genetic; D008958:Models, Molecular; D008969:Molecular Sequence Data; D010802:Phylogeny; D012269:Ribosomal Proteins / Q000235:genetics*; D017422:Sequence Analysis, DNA; D014246:Trichomonas vaginalis / Q000235:genetics*
chemical_list: D017931:DNA Primers; D004275:DNA, Ribosomal; D012269:Ribosomal Proteins