SNPP: automating large-scale SNP genotype data management.
To manage high-throughput single nucleotide polymorphism (SNP) genotyping data efficiently, we developed a dynamic general database management system-SNPP (SNP Processor). It provides several functions, including data importing with comparison, Mendelian inheritance check within pedigrees, data compiling and exporting. Furthermore, SNPP may generate files for repeat genotyping and transform them into files that can be executed by a liquid handling system.


BACKGROUND
http://orclinux.creighton.edu/snpp/


BACKGROUND
lanjuanzhao@creighton.edu
Zhao
Lan-Juan
LJ
Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University Changsha, Hunan 410081, China.
Li
Miao-Xin
MX
Guo
Yan-Fang
YF
Xu
Fu-Hua
FH
Li
Jin-Long
JL
Deng
Hong-Wen
HW
D000465:Algorithms; D002874:Chromosome Mapping / Q000379:methods*; D003628:Database Management Systems; D030561:Databases, Nucleic Acid; D005838:Genotype; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet; D015810:Linkage Disequilibrium / Q000235:genetics*; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D014584:User-Computer Interface