MSDsite: a database search and retrieval system for the analysis and viewing of bound ligands and active sites.
The three-dimensional environments of ligand binding sites have been derived from the parsing and loading of the PDB entries into a relational database. For each bound molecule the biological assembly of the quaternary structure has been used to determine all contact residues and a fast interactive search and retrieval system has been developed. Prosite pattern and short sequence search options are available together with a novel graphical query generator for inter-residue contacts. The database and its query interface are accessible from the Internet through a web server located at: http://www.ebi.ac.uk/msd-srv/msdsite.
Golovin
Adel
A
EMBL Outstation, The European Bioinformatics Institute, Welcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Dimitropoulos
Dimitris
D
Oldfield
Tom
T
Rachedi
Abdelkrim
A
Henrick
Kim
K
D000595:Amino Acid Sequence / Q000235:genetics; D001665:Binding Sites; D003628:Database Management Systems / Q000706:statistics & numerical data; D016208:Databases, Factual / Q000706:statistics & numerical data; D030562:Databases, Protein; D008024:Ligands; D046911:Macromolecular Substances / Q000378:metabolism; D008969:Molecular Sequence Data; D011485:Protein Binding
D008024:Ligands; D046911:Macromolecular Substances