A simulation study comparing the impact of experimental error on the performance of experimental designs and artificial neural networks used for process screening.
Many variables and their interactions can affect a biotechnological process. Testing a large number of variables and all their possible interactions is a cumbersome task and its cost can be prohibitive. Several screening strategies, with a relatively low number of experiments, can be used to find which variables have the largest impact on the process and estimate the magnitude of their effect. One approach for process screening is the use of experimental designs, among which fractional factorial and Plackett-Burman designs are frequent choices. Other screening strategies involve the use of artificial neural networks (ANNs). The advantage of ANNs is that they have fewer assumptions than experimental designs, but they render black-box models (i.e., little information can be extracted about the process mechanics). In this paper, we simulate a biotechnological process (fed-batch growth of baker's yeast) to analyze and compare the effect of random experimental errors of different magnitudes and statistical distributions on experimental designs and ANNs. Except for the situation in which the error has a normal distribution and the standard deviation is constant, it was not possible to determine a clear-cut rule for favoring one screening strategy over the other. Instead, we found that the data can be better analyzed using both strategies simultaneously.
Soria
Marcelo Abel
MA
Cátedra de Microbiología Agrícola, Facultad de Agronomía, Universidad de Buenos Aires, Av. San Martín 4453, 1417 Buenos Aires, Argentina. soria@agro.uba.ar
Gonzalez Funes
Jose Luis
JL
Garcia
Augusto Fernando
AF
D003470:Culture Media; D016014:Linear Models; D016571:Neural Networks, Computer; D012107:Research Design; D012441:Saccharomyces cerevisiae / Q000254:growth & development* / Q000378:metabolism
D003470:Culture Media