title: PDBML: the representation of archival macromolecular structure data in XML.
abstract: The Protein Data Bank (PDB) has recently released versions of the PDB Exchange dictionary and the PDB archival data files in XML format collectively named PDBML. The automated generation of these XML files is driven by the data dictionary infrastructure in use at the PDB. The correspondences between the PDB dictionary and the XML schema metadata are described as well as the XML representations of PDB dictionaries and data files.
authors.affiliation: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey 610 Taylor Road, Piscataway, NJ 08854, USA. jwest@rcsb.rutgers.edu
authors.forename: John
authors.initials: J
authors.lastname: Westbrook
authors.forename: Nobutoshi
authors.initials: N
authors.lastname: Ito
authors.forename: Haruki
authors.initials: H
authors.lastname: Nakamura
authors.forename: Kim
authors.initials: K
authors.lastname: Henrick
authors.forename: Helen M
authors.initials: HM
authors.lastname: Berman
mesh_terms: D000595:Amino Acid Sequence; D003628:Database Management Systems; D030562:Databases, Protein; D004282:Documentation / Q000379:methods*; D016247:Information Storage and Retrieval / Q000379:methods*; D008956:Models, Chemical; D008969:Molecular Sequence Data; D046912:Multiprotein Complexes / Q000032:analysis / Q000737:chemistry / Q000145:classification; D011381:Programming Languages; D011487:Protein Conformation; D011506:Proteins / Q000032:analysis / Q000737:chemistry* / Q000145:classification*
chemical_list: D046912:Multiprotein Complexes; D011506:Proteins