HyPhy: hypothesis testing using phylogenies.
The HyPhypackage is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution.


BACKGROUND
http://www.hyphy.org


BACKGROUND
muse@stat.ncsu.edu


BACKGROUND
HyPhydocumentation and tutorials are available at http://www.hyphy.org.
Pond
Sergei L Kosakovsky
SL
Antiviral Research Center, University of California San Diego San Diego, CA 92103, USA.
Frost
Simon D W
SD
Muse
Spencer V
SV
D000465:Algorithms; D003198:Computer Simulation; D019143:Evolution, Molecular; D008957:Models, Genetic; D010802:Phylogeny; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software; D014584:User-Computer Interface