title: Partial specific volume and solvent interactions of amphipol A8-35.
abstract: Amphipols are small amphiphilic polymers that can stabilize and keep soluble membrane proteins in aqueous solutions in the absence of detergent. A prerequisite to solution studies of membrane protein/amphipol complexes is the determination of the partial specific volume v2 and effective charge z of the polymer. The ratio (R) of the buoyant molar masses of particles in D2O and H2O solutions, obtained from sedimentation velocity (sH/sD method) and sedimentation equilibrium experiments, and their contrast match point (CMP), determined in small-angle neutron scattering experiments, depend on v2 and z. When z is known, v2 can be estimated from R with a good accuracy as long as v2 is close to 1. The effects of labile H/D exchange and of polyelectrolyte counter-ion dissociation in general cannot be neglected. The accuracy, advantages, and limits of the sH/sD method have been studied in details using model macromolecules (DNA, protein, and polysaccharide). The sH/sD method appears particularly advantageous for the study of heterogeneous samples. Measurements of density, sD/sH buoyant molar masses in H2O, D2O, and D2(18)O, and CMP of hydrogenated and partially deuterated A8-35, a polyacrylate-based amphipol containing 35 underivatized carboxylates per 100 monomers, led to a consistent description of its buoyancy and charge properties.
authors.affiliation: Laboratoire de Physico-Chimie Moléculaire des Membranes Biologiques, UMR 7099, CNRS and Université Paris-7, Institut de Biologie Physico-Chimique, CNRS FRC 550, 13 rue Pierre et Marie Curie, F-75005 Paris, France.
authors.forename: Yann
authors.initials: Y
authors.lastname: Gohon
authors.forename: Georgy
authors.initials: G
authors.lastname: Pavlov
authors.forename: Peter
authors.initials: P
authors.lastname: Timmins
authors.forename: Christophe
authors.initials: C
authors.lastname: Tribet
authors.forename: Jean-Luc
authors.initials: JL
authors.lastname: Popot
authors.forename: Christine
authors.initials: C
authors.lastname: Ebel
mesh_terms: D002244:Carbon / Q000032:analysis; D003903:Deuterium; D006493:Heparin / Q000737:chemistry; D006859:Hydrogen / Q000737:chemistry; D009682:Magnetic Resonance Spectroscopy; D015394:Molecular Structure; D008970:Molecular Weight; D011108:Polymers / Q000737:chemistry*; D011437:Propylamines / Q000737:chemistry*; D012997:Solvents / Q000737:chemistry*; D014783:Viscosity; D014867:Water / Q000737:chemistry
chemical_list: D011108:Polymers; D011437:Propylamines; D012997:Solvents; C499017:amphipol A8-35; D014867:Water; D002244:Carbon; D006859:Hydrogen; D006493:Heparin; D003903:Deuterium