title: A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness.
abstract: A platform has been developed to measure the activity of 23 enzymes that are involved in central carbon and nitrogen metabolism in Arabidopsis thaliana. Activities are assayed in optimized stopped assays and the product then determined using a suite of enzyme cycling assays. The platform requires inexpensive equipment, is organized in a modular manner to optimize logistics, calculates results automatically, combines high sensitivity with throughput, can be robotized, and has a throughput of three to four activities in 100 samples per person/day. Several of the assays, including those for sucrose phosphate synthase, ADP glucose pyrophosphorylase (AGPase), ferredoxin-dependent glutamate synthase, glycerokinase, and shikimate dehydrogenase, provide large advantages over previous approaches. This platform was used to analyze the diurnal changes of enzyme activities in wild-type Columbia-0 (Col-0) and the starchless plastid phosphoglucomutase (pgm) mutant, and in Col-0 during a prolongation of the night. The changes of enzyme activities were compared with the changes of transcript levels determined with the Affymetrix ATH1 array. Changes of transcript levels typically led to strongly damped changes of enzyme activity. There was no relation between the amplitudes of the diurnal changes of transcript and enzyme activity. The largest diurnal changes in activity were found for AGPase and nitrate reductase. Examination of the data and comparison with the literature indicated that these are mainly because of posttranslational regulation. The changes of enzyme activity are also strongly delayed, with the delay varying from enzyme to enzyme. It is proposed that enzyme activities provide a quasi-stable integration of regulation at several levels and provide useful data for the characterization and diagnosis of different physiological states. As an illustration, a decision tree constructed using data from Col-0 during diurnal changes and a prolonged dark treatment was used to show that, irrespective of the time of harvest during the diurnal cycle, the pgm mutant resembles a wild-type plant that has been exposed to a 3 d prolongation of the night.
authors.affiliation: Max Planck Institute of Molecular Plant Physiology, Science Park Golm, 14476 Golm-Potsdam, Germany. gibon@mpimp-golm.mpg.de
authors.forename: Yves
authors.initials: Y
authors.lastname: Gibon
authors.forename: Oliver E
authors.initials: OE
authors.lastname: Blaesing
authors.forename: Jan
authors.initials: J
authors.lastname: Hannemann
authors.forename: Petronia
authors.initials: P
authors.lastname: Carillo
authors.forename: Melanie
authors.initials: M
authors.lastname: Höhne
authors.forename: Janneke H M
authors.initials: JH
authors.lastname: Hendriks
authors.forename: Natalia
authors.initials: N
authors.lastname: Palacios
authors.forename: Joanna
authors.initials: J
authors.lastname: Cross
authors.forename: Joachim
authors.initials: J
authors.lastname: Selbig
authors.forename: Mark
authors.initials: M
authors.lastname: Stitt
mesh_terms: D017360:Arabidopsis / Q000201:enzymology*; D029681:Arabidopsis Proteins / Q000032:analysis* / Q000235:genetics / Q000378:metabolism; D001681:Biological Assay / Q000295:instrumentation / Q000379:methods*; D002940:Circadian Rhythm / Q000235:genetics*; D003624:Darkness; D003663:Decision Trees; D004734:Energy Metabolism / Q000502:physiology; D004798:Enzymes / Q000032:analysis* / Q000235:genetics / Q000378:metabolism; D015971:Gene Expression Regulation, Enzymologic / Q000235:genetics; D018506:Gene Expression Regulation, Plant / Q000235:genetics; D009154:Mutation / Q000235:genetics; D050901:Nitrate Reductase; D009565:Nitrate Reductases / Q000378:metabolism; D006005:Phosphorylases / Q000378:metabolism; D011499:Protein Processing, Post-Translational / Q000502:physiology; D012371:Robotics / Q000295:instrumentation / Q000379:methods*; D014158:Transcription, Genetic / Q000502:physiology
chemical_list: D029681:Arabidopsis Proteins; D004798:Enzymes; D009565:Nitrate Reductases; D050901:Nitrate Reductase; D006005:Phosphorylases