title: The role of Ca2+-coordinating residues of herring antifreeze protein in antifreeze activity.
abstract: The type II antifreeze protein of Atlantic herring (Clupea harengus harengus) requires Ca(2+) as a cofactor to inhibit the growth of ice crystals. On the basis of homology modeling with Ca(2+)-dependent lectin domains, five residues of herring antifreeze protein (hAFP) are predicted to be involved in Ca(2+) binding: Q92, D94, E99, N113, and D114. The role of E99, however, is less certain. A previous study on a double mutant EPN of hAFP suggested that the Ca(2+)-binding site of hAFP was the ice-binding site. However, it is possible that Ca(2+) might function distantly to affect ice binding. Site-directed mutagenesis was performed on the Ca(2+)-coordinating residues of hAFP in order to define the location of the ice-binding site and to explore the role of these residues in antifreeze activity. Properties of the mutants were investigated in terms of their structural integrity and antifreeze activity. Equilibrium dialysis analysis demonstrated that E99 is a Ca(2+)-coordinating residue. Moreover, proteolysis protection assay revealed that removal of Ca(2+) affected the conformation of the Ca(2+)-binding loop rather than the core structure of hAFP. This finding rules out the possibility that Ca(2+) might act at a distance via a conformational change to affect the function of hAFP. Substitutions at positions 99 and 114 resulted in severely reduced thermal hysteresis activity. These data indicate that the ice-binding site of hAFP is located at the Ca(2+)-binding site and the loop region defined by residues 99 and 114 is important for antifreeze activity.
authors.affiliation: Division of Structural Biology, Hospital for Sick Children, and Department of Laboratory Medicine and Pathobiology and of Biochemistry, University of Toronto, Toronto, Ontario, Canada.
authors.forename: Zhengjun
authors.initials: Z
authors.lastname: Li
authors.forename: Qingsong
authors.initials: Q
authors.lastname: Lin
authors.forename: Daniel S C
authors.initials: DS
authors.lastname: Yang
authors.forename: K Vanya
authors.initials: KV
authors.lastname: Ewart
authors.forename: Choy L
authors.initials: CL
authors.lastname: Hew
mesh_terms: D000409:Alanine / Q000235:genetics; D000577:Amides; D000596:Amino Acids / Q000737:chemistry* / Q000235:genetics; D000818:Animals; D021341:Antifreeze Proteins, Type II / Q000737:chemistry* / Q000235:genetics; D002118:Calcium / Q000737:chemistry*; D002122:Calcium Chloride / Q000737:chemistry; D002132:Calcium Radioisotopes / Q000378:metabolism; D002135:Calcium-Binding Proteins / Q000737:chemistry / Q000235:genetics; D003460:Crystallization; D041961:Deuterium Exchange Measurement; D006868:Hydrolysis; D007053:Ice; D016297:Mutagenesis, Site-Directed; D011487:Protein Conformation; D012697:Serine Endopeptidases / Q000737:chemistry; D013050:Spectrometry, Fluorescence
chemical_list: D000577:Amides; D000596:Amino Acids; D021341:Antifreeze Proteins, Type II; D002132:Calcium Radioisotopes; D002135:Calcium-Binding Proteins; D007053:Ice; D012697:Serine Endopeptidases; C028344:glutamyl endopeptidase; D002122:Calcium Chloride; D000409:Alanine; D002118:Calcium