title: Equilibrium free energy estimates based on nonequilibrium work relations and extended dynamics.
abstract: Jarzynski's relation and the fluctuation theorem have established important connections between nonequilibrium statistical mechanics and equilibrium thermodynamics. In particular, an exact relationship between the equilibrium free energy and the nonequilibrium work is useful for computer simulations. In this paper, we exploit the fact that the free energy is a state function, independent of the pathway taken to change the equilibrium ensemble. We show that a generalized expression is advantageous for computer simulations of free energy differences. Several methods based on this idea are proposed. The accuracy and efficiency of the proposed methods are evaluated with a model problem.
authors.affiliation: Department of Mechanical Engineering and Whitaker Insitute of Biomedical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA.
authors.forename: Erdinç
authors.initials: E
authors.lastname: Atilgan
authors.forename: Sean X
authors.initials: SX
authors.lastname: Sun
mesh_terms: D000465:Algorithms; D003198:Computer Simulation; D004735:Energy Transfer; D008956:Models, Chemical; D008958:Models, Molecular; D013816:Thermodynamics