Correlations between genomic GC levels and optimal growth temperatures are not 'robust'.
Musto et al. [FEBS Lett. 573 (2004) 73] studied the correlations between GC levels and optimal growth temperatures in 20 prokaryotic families. They reported that positive correlations are generally observed, and many of these are significant. Here, we have shown that these correlations are not "robust," i.e., correlation coefficients and/or significance of correlations can be considerably influenced by exclusion of very few (even as small as one) species from each dataset. The sensitivity of correlations is assumed as a result of high levels of bias in the family datasets. We concluded that solely based on these data, one cannot establish that GC contents of prokaryotic genomes increase as a result of growth temperature increments.
Marashi
Sayed-Amir
SA
Department of Biotechnology, Faculty of Science, University of Tehran, Enghelab Ave., Tehran, Iran. marashie@khayan.ut.ac.ir
Ghalanbor
Zahra
Z
D000222:Adaptation, Physiological; D001419:Bacteria / Q000235:genetics* / Q000254:growth & development*; D001482:Base Composition / Q000502:physiology*; D016680:Genome, Bacterial; D011387:Prokaryotic Cells / Q000502:physiology; D013223:Statistics as Topic; D013696:Temperature