title: [Cryptococcus spp. DNA extraction from environmental samples].
abstract: The genus Cryptococcus encompasses 38 species, but only 3 are associated with disease in humans and animals, Cryptococcus laurentii, Cryptococcus albidus and Cryptococcus neoformans. The last one is the most frequently reported. The disease is acquired by the inhalation of infectious propagules present in the environment. The habitat has been established using extraction techniques with buffer supplemented with antibiotics and plating in selective media. The aim of this work was to evaluate several DNA extraction techniques for Cryptocococus spp. from environmental samples. The control isolates were C. neoformans, C. albidus, C. laurentii and Paracoccidiodes brasiliensis. We also used vermiculita and soil samples contaminated with different yeast concentrations (10 to 10(6) cells/g) and samples naturally contaminated with C. neoformans. DNA was extracted with physical and chemical methods and with a commercial kit, and the DNA was purified with agarose blocks and silica columns. For the PCR amplification we used the CN4-CN5 primers, which are specific for C. neoformans. Only the commercial kit allowed DNA extraction and amplification from contaminated soil samples up to a concentration of 10 cells/g and from one sample naturally colonized. With this work we extracted and amplified DNA from Cryptococcus spp. from environmental samples with appropriate PCR specificity, it will be a tool to establish the ecological areas of C. neoformans in our country.
authors.affiliation: Grupo de Microbiología, Instituto Nacional de Salud, Bogotá, DC, Colombia.
authors.forename: Alexandra
authors.initials: A
authors.lastname: Castañeda
authors.forename: Juan
authors.initials: J
authors.lastname: McEwen
authors.forename: Marylin
authors.initials: M
authors.lastname: Hidalgo
authors.forename: Elizabeth
authors.initials: E
authors.lastname: Castañeda
mesh_terms: D016022:Case-Control Studies; D019411:Clinical Laboratory Techniques; D003453:Cryptococcosis / Q000235:genetics; D003454:Cryptococcus / Q000235:genetics* / Q000302:isolation & purification; D004271:DNA, Fungal / Q000032:analysis*; D004463:Ecology; D004777:Environment; D006801:Humans; D016133:Polymerase Chain Reaction / Q000379:methods
chemical_list: D004271:DNA, Fungal