title: Nucleotide sequence of a mitochondrial RNA virus from the plant pathogenic fungus, Helicobasidium mompa Tanaka.
abstract: A double-stranded (ds) RNA (2411 bp) from a strain V18 of the violet root rot basidiomycetous fungus, Helicobasidium mompa was sequenced. Using the fungal mitochondrial genetic code in which UGA codes for tryptophan, the positive strand of V18 dsRNA was found to contain a long open-reading frame with the potential to encode a protein of 700 amino acids (molecular mass 79,805 Da), including conserved motifs characteristic of RNA-dependent RNA polymerase (RDRP). This putative RDRP was shown to be related to putative RDRPs of several fungal mitochondrial viruses. It is proposed that V18 dsRNA is assigned to the genus Mitovirus in the family Narnaviridae and designated as H. mompa mitovirus 1-18 (HmMV1-18). Like other mitoviruses, HmMV1-18 RNA can be folded into potentially stable stem-loop structures at both the 5'- and 3'-termini, and both terminal sequences have inverted complementarity with the potential to form panhandle structure. BLAST analysis indicates that the RDRP encoded by HmMV1-18 is more closely related to those encoded by mitochondrial viruses of some ascomycetes than to that of the unassigned RsM2-1A1 dsRNA in the basidiomycetous Rhizoctonia solani. HmMV1-18 is the first member of the genus Mitovirus from basidiomycete fungi.
authors.affiliation: National Institute of Fruit Tree Science, Fujimoto, Tsukuba 305-8605, Japan. hideki@affrc.go.jp
authors.forename: Hideki
authors.initials: H
authors.lastname: Osaki
authors.forename: Hitoshi
authors.initials: H
authors.lastname: Nakamura
authors.forename: Kinya
authors.initials: K
authors.lastname: Nomura
authors.forename: Naoyuki
authors.initials: N
authors.lastname: Matsumoto
authors.forename: Koji
authors.initials: K
authors.lastname: Yoshida
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D001487:Basidiomycota / Q000235:genetics / Q000821:virology*; D004279:DNA, Viral / Q000235:genetics; D008928:Mitochondria / Q000821:virology; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D010802:Phylogeny; D010944:Plants / Q000382:microbiology; D012328:RNA Viruses / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification; D012330:RNA, Double-Stranded / Q000737:chemistry / Q000235:genetics; D012367:RNA, Viral / Q000737:chemistry / Q000235:genetics; D017386:Sequence Homology, Amino Acid
chemical_list: D004279:DNA, Viral; D012330:RNA, Double-Stranded; D012367:RNA, Viral