title: The transmembrane domain of the acetylcholine receptor: insights from simulations on synthetic peptide models.
abstract: We have studied the structure and properties of a bundle of alpha-helical peptides embedded in a 1,2-dimyristoyl-3-phosphatidylcholine phospholipid bilayer by molecular dynamics simulations. The bundle of five transmembrane deltaM2 segments constitutes the model for the pore region of the nicotinic acetylcholine receptor, which is the neurotransmitter-gated ion-channel responsible for the fast propagation of electrical signals between cells at the nerve-muscle synapse. The deltaM2 segments were shown to oligomerize in biomembranes resulting in ion-channel activity with characteristics similar to the native protein, and the structure of the isolated peptides was studied in 1,2-dimyristoyl-3-phosphatidylcholine bilayers and micelles by NMR experiments (Opella, S. J., et al. 1999. Nat. Struct. Biol. 6:374-379). Our analyses indicate that the structure, helix tilt, and the overall shape of the channel are in good agreement with the NMR experiments and the proposed model for the channel, which we show is formed by rings of functional residues. The studied geometry resulted in a closed pore state, where the channel is partially dehydrated at the hydrophobic extracellular half and the extracellular mouth of the channel blocked by the hydrocarbon chains of Arg+ residues. The arginine amino acids form intermolecular salt-bridges with the C-terminus, which contribute as well to the bundle stabilization.
authors.affiliation: Center for Molecular Modeling, Chemistry Department, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA. leonor@sas.upenn.edu
authors.forename: Leonor
authors.initials: L
authors.lastname: Saiz
authors.forename: Michael L
authors.initials: ML
authors.lastname: Klein
mesh_terms: D001665:Binding Sites; D003198:Computer Simulation; D004134:Dimyristoylphosphatidylcholine / Q000032:analysis / Q000737:chemistry*; D015640:Ion Channel Gating; D008051:Lipid Bilayers / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy; D008560:Membrane Fluidity; D008567:Membranes, Artificial; D008956:Models, Chemical; D008958:Models, Molecular; D010455:Peptides / Q000032:analysis / Q000737:chemistry*; D016062:Porosity; D011485:Protein Binding; D011487:Protein Conformation; D017434:Protein Structure, Tertiary; D011978:Receptors, Nicotinic / Q000032:analysis / Q000737:chemistry* / Q000648:ultrastructure; D013329:Structure-Activity Relationship
chemical_list: D008051:Lipid Bilayers; D008567:Membranes, Artificial; D010455:Peptides; D011978:Receptors, Nicotinic; D004134:Dimyristoylphosphatidylcholine