title: Modeling of benzocaine analog interactions with the D4S6 segment of NaV4.1 voltage-gated sodium channels.
abstract: Local anesthetics (LAs) are compounds that inhibit the propagation of action potentials in excitable tissues by blocking voltage-gated Na+ channels. Mutagenesis studies have demonstrated that several amino acid residues are important sites of LA interaction with the channel, but these studies provide little information regarding the molecular forces that govern drug-binding interactions, including the binding orientation of drugs. We used computational methods to construct a simple model of benzocaine analog binding with the D4S6 segment of rat skeletal muscle (NaV4.1) sodium channels. The model revealed that four hydrophobic residues form a binding cavity for neutral LAs, and docking studies indicated that increasing hydrophobicity among the benzocaine analogs allowed a better fit within the binding cavity. The similarities between our simple model and published experimental data suggested that modeling of LA interactions with sodium channels, along with experimental approaches, could further enhance our understanding of LA interactions with sodium channels.
authors.affiliation: Department of Biological Sciences, Murray State University, 334 Blackburn Science Building, Murray, KY 42071-3346, USA.
authors.forename: Shea A
authors.initials: SA
authors.lastname: Godwin
authors.forename: James R
authors.initials: JR
authors.lastname: Cox
authors.forename: Sterling N
authors.initials: SN
authors.lastname: Wright
mesh_terms: D000818:Animals; D001566:Benzocaine / Q000031:analogs & derivatives* / Q000737:chemistry / Q000378:metabolism*; D057927:Hydrophobic and Hydrophilic Interactions; D008958:Models, Molecular; D009154:Mutation / Q000235:genetics; D011485:Protein Binding; D017434:Protein Structure, Tertiary; D051381:Rats; D015222:Sodium Channels / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*
chemical_list: D015222:Sodium Channels; D001566:Benzocaine