RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome.
The RIKEN Arabidopsis Genome Encyclopedia (RARGE) database houses information on biological resources ranging from transcriptome to phenome, including RIKEN Arabidopsis full-length (RAFL) complementary DNAs (cDNAs), their promoter regions, Dissociation (Ds) transposon-tagged lines and expression data from microarray experiments. RARGE provides tools for searching by resource code, sequence homology or keyword, and rapid access to detailed information on the resources. We have isolated 245 946 RAFL cDNA clones and collected 11 933 transposon-tagged lines, which are available from the RIKEN Bioresource Center and are stored in RARGE. The RARGE web interface can be accessed at http://rarge.gsc.riken.jp/. Additionally, we report 90 000 new RAFL cDNA clones here.
Sakurai
Tetsuya
T
Bioinformatics Group, RIKEN Genomic Sciences Center, RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan.
Satou
Masakazu
M
Akiyama
Kenji
K
Iida
Kei
K
Seki
Motoaki
M
Kuromori
Takashi
T
Ito
Takuya
T
Konagaya
Akihiko
A
Toyoda
Tetsuro
T
Shinozaki
Kazuo
K
D017360:Arabidopsis / Q000235:genetics* / Q000378:metabolism; D004251:DNA Transposable Elements; D018076:DNA, Complementary / Q000737:chemistry; D030541:Databases, Genetic; D020869:Gene Expression Profiling; D018745:Genome, Plant; D023281:Genomics; D009154:Mutation; D020411:Oligonucleotide Array Sequence Analysis; D010641:Phenotype; D011401:Promoter Regions, Genetic; D012984:Software; D014158:Transcription, Genetic
D004251:DNA Transposable Elements; D018076:DNA, Complementary