Expa: a program for calculating extreme pathways in biochemical reaction networks.
The set of extreme pathways, a generating set for all possible steady-state flux maps in a biochemical reaction network, can be computed from the stoichiometric matrix, an incidence-like matrix reflecting the network topology. Here, we describe the implementation of a well-known algorithm to compute these pathways and give a summary of the features of the available software.


BACKGROUND
The C-code, along with a Windows executable and sample network reaction files, are available at http://systemsbiology.ucsd.edu


BACKGROUND
palsson@ucsd.edu.
Bell
Steven L
SL
Department of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA.
Palsson
Bernhard Ø
BØ
D000818:Animals; D001671:Biochemistry / Q000379:methods; D002468:Cell Physiological Phenomena; D004734:Energy Metabolism / Q000502:physiology*; D005786:Gene Expression Regulation / Q000502:physiology*; D006801:Humans; D020543:Proteome / Q000378:metabolism*; D015398:Signal Transduction / Q000502:physiology*; D012984:Software
D020543:Proteome