FindGDPs: identification of primers for labeling microbial transcriptomes for DNA microarray analysis.
FindGDPs is a program that uses a greedy algorithm to quickly identify a set of genome-directed primers that specifically anneal to all of the open reading frames ina genome and that do not exhibit full-length complementarity to the members of another user-supplied set of nucleotide sequences.
Blick
Robert J
RJ
Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, TX 75390-9048, USA.
Revel
Andrew T
AT
Hansen
Eric J
EJ
D000465:Algorithms; D001483:Base Sequence; D017931:DNA Primers / Q000032:analysis*; D004269:DNA, Bacterial / Q000032:analysis; D005827:Genetics, Microbial / Q000295:instrumentation; D040481:Genome Components; D016680:Genome, Bacterial; D020407:Internet; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D016366:Open Reading Frames; D012984:Software; D012985:Software Design; D014584:User-Computer Interface
D017931:DNA Primers; D004269:DNA, Bacterial