The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis.
The Ribosomal Database Project (RDP-II) provides the research community with aligned and annotated rRNA gene sequences, along with analysis services and a phylogenetically consistent taxonomic framework for these data. Updated monthly, these services are made available through the RDP-II website (http://rdp.cme.msu.edu/). RDP-II release 9.21 (August 2004) contains 101,632 bacterial small subunit rRNA gene sequences in aligned and annotated format. High-throughput tools for initial taxonomic placement, identification of related sequences, probe and primer testing, data navigation and subalignment download are provided. The RDP-II email address for questions or comments is rdpstaff@msu.edu.
Cole
J R
JR
Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824-4320, USA. rdpstaff@msu.edu
Chai
B
B
Farris
R J
RJ
Wang
Q
Q
Kulam
S A
SA
McGarrell
D M
DM
Garrity
G M
GM
Tiedje
J M
JM
D015342:DNA Probes; D004275:DNA, Ribosomal / Q000737:chemistry* / Q000145:classification; D030561:Databases, Nucleic Acid; D020459:Genes, rRNA; D012329:RNA, Bacterial / Q000235:genetics; D012335:RNA, Ribosomal / Q000737:chemistry / Q000145:classification; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA; D012984:Software
D015342:DNA Probes; D004275:DNA, Ribosomal; D012329:RNA, Bacterial; D012335:RNA, Ribosomal