On a six-dimensional representation of RNA secondary structures.
In this paper, we proposed a 6-D representation of RNA secondary structures. The use of the 6-D representation is illustrated by constructing structure invariants. Comparisons with the similarity/dissimilarity results based on 6-D representation for a set of RNA secondary structures, are considered to illustrate the use of our structure invariants based on the entries in derived sequence matrices restricted to a selected width of a band along the main diagonal.
Liao
Bo
B
Science 100, Graduate School of the Chinese Academy of Sciences, Beijing 100039, China. dragonbw@163.com
Ding
Kequan
K
Wang
Tian-ming
TM
D020029:Base Pairing; D001483:Base Sequence; D019295:Computational Biology; D008433:Mathematics; D009690:Nucleic Acid Conformation; D012313:RNA / Q000737:chemistry*; D012367:RNA, Viral / Q000737:chemistry
D012367:RNA, Viral; D012313:RNA