Carbohydrate Structure Suite (CSS): analysis of carbohydrate 3D structures derived from the PDB.
Knowledge of the 3D structure of glycoproteins and protein-carbohydrate complexes is indispensable to fully understand the biological processes they are involved in. Carbohydrate Structure Suite is an attempt to automatically analyse carbohydrate structures contained in the PDB and make the results publicly available on the internet. Characteristic torsion angles, glycoprotein sequences and carbohydrate-protein interactions are analysed. Furthermore, tools to crosslink the PDB and carbohydrate databases and to check the integrity of carbohydrate 3D structures are included. The service is available at (www.dkfz.de/spec/css/).
Lütteke
Thomas
T
Central Spectroscopic Department, German Cancer Research Centre, INF 280, D-69120 Heidelberg, Germany.
Frank
Martin
M
von der Lieth
Claus-W
CW
D000465:Algorithms; D000595:Amino Acid Sequence; D002236:Carbohydrate Conformation; D002240:Carbohydrate Sequence; D002241:Carbohydrates / Q000737:chemistry; D030562:Databases, Protein; D006023:Glycoproteins / Q000737:chemistry*; D006031:Glycosylation; D008958:Models, Molecular; D015394:Molecular Structure; D012984:Software
D002241:Carbohydrates; D006023:Glycoproteins