CGH-Plotter: MATLAB toolbox for CGH-data analysis.
CGH-Plotter is a MATLAB toolbox with a graphical user interface for the analysis of comparative genomic hybridization (CGH) microarray data. CGH-Plotter provides a tool for rapid visualization of CGH-data according to the locations of the genes along the genome. In addition, the CGH-Plotter identifies regions of amplifications and deletions, using k-means clustering and dynamic programming. The application offers a convenient way to analyze CGH-data and can also be applied for the analysis of cDNA microarray expression data. CGH-Plotter toolbox is platform independent and requires MATLAB 6.1 or higher to operate.
Autio
Reija
R
Institute of Signal Processing, Tampere University of Technology, 33101 Finland.
Hautaniemi
Sampsa
S
Kauraniemi
Päivikki
P
Yli-Harja
Olli
O
Astola
Jaakko
J
Wolf
Maija
M
Kallioniemi
Anne
A
D016000:Cluster Analysis; D003626:Data Display; D003627:Data Interpretation, Statistical; D006824:Hybridization, Genetic / Q000235:genetics*; D020407:Internet; D040081:Protein Array Analysis / Q000379:methods*; D012107:Research Design; D012815:Signal Processing, Computer-Assisted; D014584:User-Computer Interface