title: CGH-Plotter: MATLAB toolbox for CGH-data analysis.
abstract: CGH-Plotter is a MATLAB toolbox with a graphical user interface for the analysis of comparative genomic hybridization (CGH) microarray data. CGH-Plotter provides a tool for rapid visualization of CGH-data according to the locations of the genes along the genome. In addition, the CGH-Plotter identifies regions of amplifications and deletions, using k-means clustering and dynamic programming. The application offers a convenient way to analyze CGH-data and can also be applied for the analysis of cDNA microarray expression data. CGH-Plotter toolbox is platform independent and requires MATLAB 6.1 or higher to operate.
authors.affiliation: Institute of Signal Processing, Tampere University of Technology, 33101 Finland.
authors.forename: Reija
authors.initials: R
authors.lastname: Autio
authors.forename: Sampsa
authors.initials: S
authors.lastname: Hautaniemi
authors.forename: Päivikki
authors.initials: P
authors.lastname: Kauraniemi
authors.forename: Olli
authors.initials: O
authors.lastname: Yli-Harja
authors.forename: Jaakko
authors.initials: J
authors.lastname: Astola
authors.forename: Maija
authors.initials: M
authors.lastname: Wolf
authors.forename: Anne
authors.initials: A
authors.lastname: Kallioniemi
mesh_terms: D016000:Cluster Analysis; D003626:Data Display; D003627:Data Interpretation, Statistical; D006824:Hybridization, Genetic / Q000235:genetics*; D020407:Internet; D040081:Protein Array Analysis / Q000379:methods*; D012107:Research Design; D012815:Signal Processing, Computer-Assisted; D014584:User-Computer Interface