Counter-propagation artificial neural network as a tool for the independent variable selection: structure-mutagenicity study on aromatic amines.
The counter-propagation artificial neural network (CP ANN) technique was applied for the independent variable selection and for structure-mutagenic potency modeling on a set of 95 aromatic and heteroaromatic amines with biological activity investigated experimentally by an in vitro assay. The molecular structures were represented by 275 independent variables classified as topostructural, topochemical, geometrical and quantum-chemical descriptors. As a result of the neural network modeling, the following descriptors were found to be the most important for structure-activity relationship: 5 chi -path connectivity index of order h = 5, 3chibC-bond cluster connectivity index of order h = 3, J(B)-Balaban's J index based on bond types, SHSNH2-electrotopological state index values for atoms, phia-flexibility index (kappa p1 x kappa p2/nvx), IC0-mean information content or complexity of a graph based on the 0 order neighborhood of vertices in a hydrogen-filled graph and ELUMO. The leave one out (LOO) method was used in order to test and select the models for mutagenicity prediction. The statistical parameters for the 7-descriptors model are R(Model) = 0.96 and Rcv = 0.85, respectively. In the next step, the number of variables was reduced and the 4-descriptors model was found (R(Model) = 0.95 and Rcv = 0.85) and classified as the best one.
Jezierska
Aneta
A
University of Wrocław, Faculty of Chemistry, 14 F Joliot-Curie, Poland.
Vracko
Marjan
M
Basak
Subhash C
SC
D000465:Algorithms; D000588:Amines / Q000737:chemistry*; D003198:Computer Simulation; D008962:Models, Theoretical; D016296:Mutagenesis; D009152:Mutagenicity Tests / Q000379:methods*; D009153:Mutagens; D016571:Neural Networks, Computer; D013329:Structure-Activity Relationship
D000588:Amines; D009153:Mutagens