Mesoscopic dynamic Monte Carlo simulations of the adsorption of proteinlike HP chains within laterally constricted spaces.
Two-dimensional dynamic Monte Carlo simulations are applied to the protein-like HP chain model to investigate the influence of lateral confinement of the adsorbed chain on adsorption thermodynamics and the ensemble of accessible chain conformations. The structure of the model makes it possible to enumerate all possible chain conformations and thereby define with precision the relation between adsorption thermodynamics and changes in accessible chain conformations resulting from the adsorption process. Lateral confinement of the adsorbed chain is shown to dramatically reduce the number of accessible energy states and unique chain conformations such that, under certain conditions, adsorption is predicted to actually stabilize the chain against denaturation. Lateral confinement preferentially eliminates expanded conformations of the adsorbed chain, shifting the equilibrium from the unfolded state toward the native state. As a result, the conformational entropy of the adsorbed chain is predicted to be lower than that of the chain free in solution. The protein-like HP chain responds to an increase in the hydrophobicity of the sorbent surface by strongly favoring those conformations that minimize the overall internal energy of the system. As a result, adsorption severely destabilizes the native-state conformation. The ability of our simulation results to provide insights into underlying mechanisms for nonspecific protein adsorption is illustrated through qualitative comparison with activity data for hen egg-white lysozyme adsorbed on silica at different surface concentrations.
Liu
Susan M
SM
The Biotechnology Laboratory and The Department of Chemical and Biological Engineering, University of British Columbia, 237 Wesbrook Building, Vancouver, British Columbia, Canada V6T 1Z3.
Haynes
Charles A
CA
D000327:Adsorption; D002151:Calorimetry; D055598:Chemical Phenomena; D002621:Chemistry / Q000379:methods*; D002627:Chemistry, Physical; D003198:Computer Simulation; D008958:Models, Molecular; D015233:Models, Statistical; D008968:Molecular Conformation; D009010:Monte Carlo Method; D009113:Muramidase / Q000737:chemistry; D013499:Surface Properties; D013816:Thermodynamics; D013997:Time Factors
C421864:hen egg lysozyme; D009113:Muramidase