[The structure of the complexes of DNA with non-histone chromosomal protein HMGB1 in the presence of manganese ions].
The complexes of DNA - HMGB1 protein - manganese ions have been studied using circular dichroism (CD) technique. It was shown that in such three-component system the interactions of both the protein and metal ions with DNA differ from those in two-component complexes. The manganese ions do not affect the CD spectrum of free HMGB1 protein. However, Mn2+ ions induce considerable changes in the CD spectrum of free DNA in the spectral range of 260-290 nm. The presence of Mn2+ ions prevents formation of the ordered supramolecular structures specific for the HMGB1-DNA complexes. The interaction of manganese ions with DNA has a marked influence on the local DNA structure changing the properties of protein-binding sites. This results in the serious decrease in cooperativity of the DNA-protein binding. Such changes in the mode of the DNA-protein interactions occur at concentrations as small as 0.01 mM Mn2+. Moreover, the changes in local DNA structure induced by manganese ions promote the appearance of new HMGB1 binding sites on the DNA double helix. At the same time interactions with HMGB1 protein induce alterations in the structure of the DNA double helix which increase with a growth of the protein/DNA ratio. These alterations make the DNA/protein complex especially sensitive to manganese ions. Under these conditions the Mn2+ ions strongly affect the DNA structure that reflects in abrupt changes of the CD spectra of DNA in the complex in the range of 260-290 nm. Thus, structural changes of the DNA double helix in the three-component DNA-HMGB1-Mn2+ complexes come as a result of the combined and interdependent interactions of DNA with Mn2+ ions and the molecules of HMGB1.
Polianichko
A M
AM
Chikhirzhina
E V
EV
Kostyleva
E I
EI
Vorob'ev
V I
VI
D002942:Circular Dichroism; D004247:DNA / Q000737:chemistry* / Q000378:metabolism; D024243:HMGB1 Protein / Q000737:chemistry* / Q000378:metabolism; D008345:Manganese / Q000737:chemistry*; D015394:Molecular Structure; D011485:Protein Binding; D013056:Spectrophotometry, Ultraviolet
D024243:HMGB1 Protein; D008345:Manganese; D004247:DNA