title: EST pipeline system: detailed and automated EST data processing and mining.
abstract: Expressed sequence tags (ESTs) are widely used in gene survey research these years. The EST Pipeline System, software developed by Hangzhou Genomics Institute (HGI), can automatically analyze different scalar EST sequences by suitable methods. All the analysis reports, including those of vector masking, sequence assembly, gene annotation, Gene Ontology classification, and some other analyses, can be browsed and searched as well as downloaded in the Excel format from the web interface, saving research efforts from routine data processing for biological rules embedded in the data.
authors.affiliation: Hangzhou Genomics Institute/James D. Watson Institute of Genome Sciences, Zhejiang University/Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310008, China.
authors.forename: Hao
authors.initials: H
authors.lastname: Xu
authors.forename: Ling
authors.initials: L
authors.lastname: He
authors.forename: Yuanzhong
authors.initials: Y
authors.lastname: Zhu
authors.forename: Wei
authors.initials: W
authors.lastname: Huang
authors.forename: Lijun
authors.initials: L
authors.lastname: Fang
authors.forename: Lin
authors.initials: L
authors.lastname: Tao
authors.forename: Yuedong
authors.initials: Y
authors.lastname: Zhu
authors.forename: Lin
authors.initials: L
authors.lastname: Cai
authors.forename: Huayong
authors.initials: H
authors.lastname: Xu
authors.forename: Liang
authors.initials: L
authors.lastname: Zhang
authors.forename: Hong
authors.initials: H
authors.lastname: Xu
authors.forename: Yan
authors.initials: Y
authors.lastname: Zhou
mesh_terms: D001331:Automation; D001482:Base Composition; D019295:Computational Biology / Q000379:methods*; D030541:Databases, Genetic; D020224:Expressed Sequence Tags; D012984:Software; D014584:User-Computer Interface