title: Functional roles of carboxylate residues comprising the DNA polymerase active site triad of Ty3 reverse transcriptase.
abstract: Aspartic acid residues comprising the -D-(aa) n -Y-L-D-D- DNA polymerase active site triad of reverse transcriptase from the Saccharomyces cerevisiae long terminal repeat-retrotransposon Ty3 (Asp151, Asp213 and Asp214) were evaluated via site-directed mutagenesis. An Asp151-->Glu substitution showed a dramatic decrease in catalytic efficiency and a severe translocation defect following initiation of DNA synthesis. In contrast, enzymes harboring the equivalent alteration at Asp213 and Asp214 retained DNA polymerase activity. Asp151-->Asn and Asp213-->Asn substitutions eliminated both polymerase activities. However, while Asp214 of the triad could be replaced by either Asn or Glu, introducing Gln seriously affected processivity. Mutants of the carboxylate triad at positions 151 and 213 also failed to catalyze pyrophosphorolysis. Finally, alterations to the DNA polymerase active site affected RNase H activity, suggesting a close spatial relationship between these N- and C-terminal catalytic centers. Taken together, our data reveal a critical role for Asp151 and Asp213 in catalysis. In contrast, the second carboxylate of the Y-L-D-D motif (Asp214) is not essential for catalysis, and possibly fulfills a structural role. Although Asp214 was most insensitive to substitution with respect to activity of the recombinant enzyme, all alterations at this position were lethal for Ty3 transposition.
authors.affiliation: Resistance Mechanisms Laboratory, RT Biochemistry Section, HIV Drug Resistance Program, National Cancer Institute at Frederick Frederick, MD 21702, USA.
authors.forename: Arkadiusz
authors.initials: A
authors.lastname: Bibillo
authors.forename: Daniela
authors.initials: D
authors.lastname: Lener
authors.forename: George J
authors.initials: GJ
authors.lastname: Klarmann
authors.forename: Stuart F J
authors.initials: SF
authors.lastname: Le Grice
mesh_terms: D019943:Amino Acid Substitution; D001224:Aspartic Acid / Q000737:chemistry*; D001665:Binding Sites; D004247:DNA / Q000378:metabolism; D004259:DNA-Directed DNA Polymerase / Q000378:metabolism; D007700:Kinetics; D008345:Manganese / Q000737:chemistry; D016297:Mutagenesis, Site-Directed; D010756:Phosphoric Acids / Q000378:metabolism; D012194:RNA-Directed DNA Polymerase / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D018626:Retroelements; D016914:Ribonuclease H / Q000378:metabolism; D029701:Saccharomyces cerevisiae Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*
chemical_list: D010756:Phosphoric Acids; D018626:Retroelements; D029701:Saccharomyces cerevisiae Proteins; D001224:Aspartic Acid; D008345:Manganese; D004247:DNA; D012194:RNA-Directed DNA Polymerase; C496084:reverse transcriptase Ty3, S cerevisiae; D004259:DNA-Directed DNA Polymerase; D016914:Ribonuclease H