title: [Genetic diversity of microsatellite loci in captive Amur tigers].
abstract: The tiger is one of the most threatened wildlife species since the abundance and distribution of tiger have decreased dramatically in the last century. The wild Amur tiger (Panthera tigris altaica) only distributed in northeast China, the far east area of Russia and the north Korea and its size of wild population is about 450 in the world and 20 in China. Several hundred captive populations of Amur tigers are the main source to protect gene library of tiger and the source of recovering the wild populations. The Breeding Center for Felidae at Hengdaohezi and Haoerbin Tiger Park in Heilongjiang Province is the biggest captive breeding base in China. How to make clear the genetic pedigree and establish reasonable breeding system is the urgent issues. So we use the microsatellite DNA markers and non-invasive technology to research on the genetic diversity of captive Amur tiger in this study. Ten microsatellite loci (Fca005, Fca075, Fca094, Fca152, Fca161, Fca294, Pti002, Pti003, Pti007 and Pti010), highly variable nuclear markers, were studied their genetic diversity in 113 captive Amur tigers. The PCR amplified products of microsatellite loci were detected by non-denatured polyacrylamide gel electrophoresis. Allele numbers, allelic frequency, gene heterozygosity(H(e)), polymorphism information content(PIC) and effective number of allele(N(e)) were calculated. 41 alleles were found and their size were ranged from 110bp to 250bp in ten microsatellite loci, Fca152 had 6 alleles, Fca075, Fca094 and Fca294 had 5 alleles, Fca005 and Pti002 had 4 alleles and the others had 3 alleles in all tiger samples, respectively. The allelic frequencies were from 0.009 to 0.767; The He ranged from 0.385 to 0.707, and Fca294 and Pti010 locus had the highest and lowest value; the PIC were from 0.353 to 0.658, Fca294 and Pti010 locus had the highest and lowest value; and N(e) were from 1.626 to 3.409, Fca294 and Pti010 locus had the highest and lowest value, which showed the ten microsatellie loci had high or medium polymorphism in these Amur tigers and had high genetic diversity. At the same time, we only found even bases variability which showed the even bases repeat sequence (CA/GT) maybe the basic unit for length variability of microsatellite in all loci. In this study, the samples were made up of 75 hair specimens, 23 blood specimens and 15 tissue specimens, we obtained the genome DNA from hairs using the non-invasive DNA technology and demonstrated that DNA derived from hair samples is as good as that obtained from blood samples for the analysis of microsatellite polymorphism. These results imply that microsatellite DNA markers and non-invasive DNA technology can help study the genetic diversity of Amur tiger. This method could be used in the captive management of other endangered species.
authors.affiliation: Insatitute of Forestry Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing 100 091, China. yugzhang@sina.com.cn
authors.forename: Yu-Gaung
authors.initials: YG
authors.lastname: Zhang
authors.forename: Di-Qiang
authors.initials: DQ
authors.lastname: Li
authors.forename: Qi-Ming
authors.initials: QM
authors.lastname: Xiao
authors.forename: Li-Qun
authors.initials: LQ
authors.lastname: Rao
authors.forename: Xue-Wen
authors.initials: XW
authors.lastname: Zhang
mesh_terms: D000483:Alleles; D000818:Animals; D001947:Breeding; D004247:DNA / Q000235:genetics / Q000302:isolation & purification; D005787:Gene Frequency; D014644:Genetic Variation; D006197:Hair / Q000737:chemistry; D006579:Heterozygote; D018895:Microsatellite Repeats / Q000235:genetics*; D011110:Polymorphism, Genetic; D046010:Tigers / Q000235:genetics*
chemical_list: D004247:DNA