EST pipeline system: detailed and automated EST data processing and mining.
Expressed sequence tags (ESTs) are widely used in gene survey research these years. The EST Pipeline System, software developed by Hangzhou Genomics Institute (HGI), can automatically analyze different scalar EST sequences by suitable methods. All the analysis reports, including those of vector masking, sequence assembly, gene annotation, Gene Ontology classification, and some other analyses, can be browsed and searched as well as downloaded in the Excel format from the web interface, saving research efforts from routine data processing for biological rules embedded in the data.
Xu
Hao
H
Hangzhou Genomics Institute/James D. Watson Institute of Genome Sciences, Zhejiang University/Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310008, China.
He
Ling
L
Zhu
Yuanzhong
Y
Huang
Wei
W
Fang
Lijun
L
Tao
Lin
L
Zhu
Yuedong
Y
Cai
Lin
L
Xu
Huayong
H
Zhang
Liang
L
Xu
Hong
H
Zhou
Yan
Y
D001331:Automation; D001482:Base Composition; D019295:Computational Biology / Q000379:methods*; D030541:Databases, Genetic; D020224:Expressed Sequence Tags; D012984:Software; D014584:User-Computer Interface