title: Inducible DNA-loop formation blocks transcriptional activation by an SV40 enhancer.
abstract: It is well established that gene expression in eukaryotes is controlled by sequence-dependent binding of trans-acting proteins to regulatory elements like promoters, enhancers or silencers. A less well understood level of gene regulation is governed by the various structural and functional states of chromatin, which have been ascribed to changes in covalent modification of core histone proteins. And, much on how topological domains in the genome take part in establishing and maintaining distinct gene expression patterns is still unknown. Here we present a set of regulatory proteins that allow to reversibly alter the DNA structure in vivo and in vitro by adding low molecular weight effectors that control their oligomerization and DNA binding. Using this approach, we completely regulate the activity of an SV40 enhancer in HeLa cells by reversible loop formation to topologically separate it from the promoter. This result establishes a new mechanism for DNA-structure-dependent gene regulation in vivo and provides evidence supporting the structural model of insulator function.
authors.affiliation: Lehrstuhl für Mikrobiologie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, Germany.
authors.forename: Stefan Ludwig
authors.initials: SL
authors.lastname: Ameres
authors.forename: Lars
authors.initials: L
authors.lastname: Drueppel
authors.forename: Klaus
authors.initials: K
authors.lastname: Pfleiderer
authors.forename: Andreas
authors.initials: A
authors.lastname: Schmidt
authors.forename: Wolfgang
authors.initials: W
authors.lastname: Hillen
authors.forename: Christian
authors.initials: C
authors.lastname: Berens
mesh_terms: D001483:Base Sequence; D004247:DNA / Q000737:chemistry*; D017931:DNA Primers; D019281:Dimerization; D004742:Enhancer Elements, Genetic; D006367:HeLa Cells; D006801:Humans; D010957:Plasmids; D013539:Simian virus 40 / Q000235:genetics*; D015533:Transcriptional Activation / Q000235:genetics*
chemical_list: D017931:DNA Primers; D004247:DNA