title: Comparison of the expressed porcine Vbeta and Jbeta repertoire of thymocytes and peripheral T cells.
abstract: Transcripts of more than 300 unique T-cell receptor-beta (TCR-beta) V-D-J rearrangements recovered from porcine thymocytes and peripheral T cells were compared. We identified 19 groups (families) of porcine Vbeta genes in seven supergroups and provisionally named 17 groups based on their sequence similarity with recognized human Vbeta gene families. TRBV4S, 5S, 7S and 12S accounted for >80% of all Vbeta usage, and usage of these groups by thymocytes and peripheral T cells was highly correlated. No TRBV group was uniquely expressed in significant numbers in thymocytes, although small numbers of TRBV groups 2S, 9S and 15S were only recovered from T cells. Usage of Jbeta segments from the 5' D-J-C duplicon in thymocytes and peripheral T cells directly correlated with their 5' position in the locus, and Jbeta1.1, 1.2 and 1.3 accounted for >or= 35% of all Jbeta usage in both cell types. This contrasts with the usage of Jbeta2 segments in that Jbeta2.4, 2.5 and 2.7 accounted for approximately 30% of Jbeta usage by T cells and thymocytes. Jbeta2.7 was threefold more frequent among T cells than thymocytes. The Vbeta/Jbeta combination was not random. Jbeta1.1 and 1.2 were used in 29% of rearrangements with high frequency among the major Vbeta groups. Combinations of TRBV4 and V12 with Jbeta2.7 were only found in T cells and accounted for half of all Jbeta2.7 usage. These studies show that unlike porcine heavy chain V(H) genes, the occurrence and relative usage of porcine TCR-Vbeta groups resembles that of humans. Thus, highly related gene systems can individually diverge within a species.
authors.affiliation: Department of Microbiology, The University of Iowa, Iowa City, IA 52242-1109, USA. john-butler@uiowa.edu
authors.forename: John E
authors.initials: JE
authors.lastname: Butler
authors.forename: Nancy
authors.initials: N
authors.lastname: Wertz
authors.forename: Jishan
authors.initials: J
authors.lastname: Sun
authors.forename: Randy E
authors.initials: RE
authors.lastname: Sacco
mesh_terms: D000818:Animals; D000831:Animals, Newborn / Q000276:immunology*; D001483:Base Sequence; D003001:Cloning, Molecular; D017124:Conserved Sequence; D015333:Gene Rearrangement, beta-Chain T-Cell Antigen Receptor; D006801:Humans; D007133:Immunoglobulin Joining Region; D007135:Immunoglobulin Variable Region; D051379:Mice; D008969:Molecular Sequence Data; D016415:Sequence Alignment; D017422:Sequence Analysis, DNA; D013552:Swine / Q000276:immunology*; D013601:T-Lymphocytes / Q000276:immunology*; D013950:Thymus Gland / Q000276:immunology*
chemical_list: D007133:Immunoglobulin Joining Region; D007135:Immunoglobulin Variable Region