title: Large-scale DNA microarray analysis of atopic skin lesions shows overexpression of an epidermal differentiation gene cluster in the alternative pathway and lack of protective gene expression in the cornified envelope.
abstract: BACKGROUND
  Atopic dermatitis (AD)-specific genes have not yet been clarified. Objectives To identify gene expression specific to active atopic skin lesions.
  
  
  METHODS
  We analysed 23,000 genes in skin biopsy samples from 17 patients with AD and four normal controls using Affymetrix oligonucleotide arrays.
  
  
  RESULTS
  Four of the 10 genes with the greatest differences in expression between patients and controls, S100A8 and S100A7 (upregulated), and loricrin and filaggrin (downregulated), were epidermal differentiation genes located on 1q21, a locus previously reported to have a genetic linkage with AD.
  
  
  CONCLUSIONS
  Our results, showing downregulation of the cornified envelope genes and upregulation of the alternative keratinization pathway, are the first to suggest abnormal epidermal differentiation and defective defences as key abnormalities in AD.
authors.affiliation: Department of Dermatology, Shiga University of Medical Science, Seta Otsu 520-2192, Japan. sugiurah@belle.shiga-med.ac.jp
authors.forename: H
authors.initials: H
authors.lastname: Sugiura
authors.forename: H
authors.initials: H
authors.lastname: Ebise
authors.forename: T
authors.initials: T
authors.lastname: Tazawa
authors.forename: K
authors.initials: K
authors.lastname: Tanaka
authors.forename: Y
authors.initials: Y
authors.lastname: Sugiura
authors.forename: M
authors.initials: M
authors.lastname: Uehara
authors.forename: K
authors.initials: K
authors.lastname: Kikuchi
authors.forename: T
authors.initials: T
authors.lastname: Kimura
mesh_terms: D000328:Adult; D002454:Cell Differentiation / Q000235:genetics; D002878:Chromosomes, Human, Pair 1 / Q000235:genetics; D003876:Dermatitis, Atopic / Q000235:genetics* / Q000378:metabolism / Q000473:pathology; D004817:Epidermis / Q000473:pathology*; D005260:Female; D000091344:Filaggrin Proteins; D020869:Gene Expression Profiling; D005786:Gene Expression Regulation; D020022:Genetic Predisposition to Disease; D006801:Humans; D015603:Keratinocytes / Q000473:pathology; D007633:Keratins / Q000235:genetics / Q000378:metabolism; D008297:Male; D005810:Multigene Family; D020411:Oligonucleotide Array Sequence Analysis
chemical_list: C000717249:FLG protein, human; D000091344:Filaggrin Proteins; D007633:Keratins