Large-scale DNA microarray analysis of atopic skin lesions shows overexpression of an epidermal differentiation gene cluster in the alternative pathway and lack of protective gene expression in the cornified envelope.
BACKGROUND
Atopic dermatitis (AD)-specific genes have not yet been clarified. Objectives To identify gene expression specific to active atopic skin lesions.


METHODS
We analysed 23,000 genes in skin biopsy samples from 17 patients with AD and four normal controls using Affymetrix oligonucleotide arrays.


RESULTS
Four of the 10 genes with the greatest differences in expression between patients and controls, S100A8 and S100A7 (upregulated), and loricrin and filaggrin (downregulated), were epidermal differentiation genes located on 1q21, a locus previously reported to have a genetic linkage with AD.


CONCLUSIONS
Our results, showing downregulation of the cornified envelope genes and upregulation of the alternative keratinization pathway, are the first to suggest abnormal epidermal differentiation and defective defences as key abnormalities in AD.
Sugiura
H
H
Department of Dermatology, Shiga University of Medical Science, Seta Otsu 520-2192, Japan. sugiurah@belle.shiga-med.ac.jp
Ebise
H
H
Tazawa
T
T
Tanaka
K
K
Sugiura
Y
Y
Uehara
M
M
Kikuchi
K
K
Kimura
T
T
D000328:Adult; D002454:Cell Differentiation / Q000235:genetics; D002878:Chromosomes, Human, Pair 1 / Q000235:genetics; D003876:Dermatitis, Atopic / Q000235:genetics* / Q000378:metabolism / Q000473:pathology; D004817:Epidermis / Q000473:pathology*; D005260:Female; D000091344:Filaggrin Proteins; D020869:Gene Expression Profiling; D005786:Gene Expression Regulation; D020022:Genetic Predisposition to Disease; D006801:Humans; D015603:Keratinocytes / Q000473:pathology; D007633:Keratins / Q000235:genetics / Q000378:metabolism; D008297:Male; D005810:Multigene Family; D020411:Oligonucleotide Array Sequence Analysis
C000717249:FLG protein, human; D000091344:Filaggrin Proteins; D007633:Keratins