Structural basis for mRNA recognition by elongation factor SelB.
In bacteria, incorporation of selenocysteine, the 21(st) amino acid, into proteins requires elongation factor SelB, which has the unusual property of binding to both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity, the molecular basis of which has been unknown. We have determined the crystal structure of the mRNA-binding domain of SelB in complex with SECIS RNA at a resolution of 2.3 A. This is the first example of a complex between an RNA and a winged-helix (WH) domain, a motif found in many DNA-binding proteins and recently discovered in RNA-binding proteins. Notably, RNA binding does not induce a major conformational change in the WH motif. The structure reveals a new mode of RNA recognition with a geometry that allows the complex to wrap around the small ribosomal subunit.
Yoshizawa
Satoko
S
Laboratoire de RMN, Institut de Chimie des Substances Naturelles, Centre National de la Recherche Scientifique, 1 Avenue de la Terrasse, 91190 Gif-sur-Yvette, France. yoshizawa@icsn.cnrs-gif.fr
Rasubala
Linda
L
Ose
Toyoyuki
T
Kohda
Daisuke
D
Fourmy
Dominique
D
Maenaka
Katsumi
K
D020816:Amino Acid Motifs; D001426:Bacterial Proteins / Q000737:chemistry* / Q000378:metabolism*; D001483:Base Sequence; D018360:Crystallography, X-Ray; D008954:Models, Biological; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D010445:Peptide Elongation Factors / Q000737:chemistry* / Q000378:metabolism*; D010710:Phosphates / Q000737:chemistry / Q000378:metabolism; D017434:Protein Structure, Tertiary; D012333:RNA, Messenger / Q000235:genetics / Q000378:metabolism*; D012270:Ribosomes / Q000378:metabolism; D013379:Substrate Specificity; D046968:Thermoanaerobacter / Q000737:chemistry / Q000378:metabolism
D001426:Bacterial Proteins; D010445:Peptide Elongation Factors; D010710:Phosphates; D012333:RNA, Messenger; C061878:SelB protein, Bacteria