title: Use of a novel virus inactivation method for a multicenter avian influenza real-time reverse transcriptase-polymerase chain reaction proficiency study.
abstract: Proficiency assessments are important elements in quality control for diagnostic laboratories. Traditionally, proficiency testing for polymerase chain reaction (PCR)-based assays has involved the use of clinical samples, samples "spiked" with live agents or DNA plasmids. Because of government regulations and biosecurity concerns, distribution of live high-consequence pathogens of livestock and poultry, such as avian influenza, is not possible, and DNA plasmids are not technically suitable for evaluating RNA virus detection. Therefore, a proficiency testing panel using whole avian influenza in a diluent containing a phenolic disinfectant that inactivates the virus while preserving the RNA for at least 8 weeks at -70 C was developed and used in a multicenter proficiency assessment for a type A influenza real-time reverse transcriptase (RT)-PCR test. The test, which was highly standardized, except for variation in the real-time RT-PCR equipment used, was shown to be highly reproducible by proficiency testing in 12 laboratories in the United States, Canada, and Hong Kong. Variation in cycle threshold values among 35 data sets and 490 samples was minimal (CV = 5.19%), and sample identifications were highly accurate (96.7% correct identifications) regardless of real-time PCR instrumentation.
authors.affiliation: Southeast Poultry Research Laboratory, USDA-ARS, Athens, GA 30605, USA.
authors.forename: Erica
authors.initials: E
authors.lastname: Spackman
authors.forename: David L
authors.initials: DL
authors.lastname: Suarez
mesh_terms: D004202:Disinfectants / Q000494:pharmacology*; D009980:Influenza A virus / Q000187:drug effects / Q000302:isolation & purification*; D007753:Laboratories / Q000592:standards*; D011786:Quality Control; D012367:RNA, Viral / Q000187:drug effects; D015203:Reproducibility of Results; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000592:standards / Q000662:veterinary*; D038301:Virus Inactivation / Q000187:drug effects*
chemical_list: D004202:Disinfectants; D012367:RNA, Viral