title: Detection and molecular characterisation of bovine polyomavirus in bovine sera in New Zealand.
abstract: OBJECTIVE
  To investigate the prevalence of bovine polyomavirus (BPyV) DNA in commercial batches of bovine serum products, cell lines and cattle in New Zealand and to characterise the viral DNA detected.
  
  
  METHODS
  Two nested polymerase chain reaction (PCR) assays were applied to detect BPyV in bovine sera. One was used to screen for the VP1 gene of BPyV DNA in: 140 batches of commercial bovine serum products, including 66 batches of fetal bovine serum (FBS), 34 batches of calf serum, and 40 batches of adult bovine serum (ABS)/plasma; 112 individual adult bovine sera; and 16 cell lines of various species origin. Fifty batches of serum samples were also tested, using the second nested PCR assay that screened for the Large T gene. Restriction fragment length polymorphism (RFLP) was conducted with 36 PCR products amplified from the VP1 gene of BPyV using EcoRI. Five selected VP1 PCR products were subjected to DNA sequencing and phylogenetic analysis.
  
  
  RESULTS
  BPyV DNA was detected in 46 (70%) batches of FBS, 11 (32%) batches of calf sera and two (5%) batches of ABS/plasma, an overall prevalence of 42%. None of 112 adult bovine sera was BPyV-positive. RFLP analysis demonstrated a uniform digestion pattern in the majority (31/36) of amplicons tested, while the remaining PCR amplicons did not show enzyme cleavage. Sequence analysis of the PCR products (a 263 base pair (bp) fragment of the VP1 gene) obtained from five batches of FBS showed 96.2-98.9% homology to that of published sequences of BPyV.
  
  
  CONCLUSIONS
  BPyV is a frequent contaminant of commercial bovine serum in New Zealand. The incidence of BPyV in adult bovine serum products is much lower than in FBS and calf serum. Genomic variations exist among different viruses. The clinical significance of the high prevalence of BPyV DNA in bovine serum products is yet to be determined.
authors.affiliation: National Centre for Disease Investigation (NCDI), PO Box 40742, Upper Hutt, New Zealand. jianning.wang@maf.govt.nz
authors.forename: J
authors.initials: J
authors.lastname: Wang
authors.forename: G W
authors.initials: GW
authors.lastname: Horner
authors.forename: J S
authors.initials: JS
authors.lastname: O'Keefe
mesh_terms: D000818:Animals; D001483:Base Sequence; D002417:Cattle; D002418:Cattle Diseases / Q000097:blood / Q000453:epidemiology* / Q000821:virology; D017931:DNA Primers; D004279:DNA, Viral / Q000032:analysis / Q000097:blood; D008969:Molecular Sequence Data; D009520:New Zealand / Q000453:epidemiology; D016133:Polymerase Chain Reaction / Q000662:veterinary; D012150:Polymorphism, Restriction Fragment Length; D011120:Polyomavirus / Q000235:genetics / Q000302:isolation & purification*; D027601:Polyomavirus Infections / Q000453:epidemiology / Q000662:veterinary*; D015995:Prevalence; D016415:Sequence Alignment; D012710:Serum Albumin, Bovine / Q000032:analysis; D014412:Tumor Virus Infections / Q000453:epidemiology / Q000662:veterinary*
chemical_list: D017931:DNA Primers; D004279:DNA, Viral; D012710:Serum Albumin, Bovine