title: Broad-range (pan) Salmonella and Salmonella serotype typhi-specific real-time PCR assays: potential tools for the clinical microbiologist.
abstract: We describe broad-range salmonellae (ie, Salmonella) and Salmonella serotype Typhi-specific LightCycler (Roche Diagnostics, Indianapolis, IN) real-time polymerase chain reaction assays. We validated these with a battery of 280 bacteria, 108 of which were salmonellae representing 20 serotypes. In addition, 298 isolates from 170 clinical specimens that were suspected to possibly represent Salmonella were tested with the pan- Salmonella assay. Finally, the pan-Salmonella assay also was used to test DNA extracts from 101 archived, frozen stool specimens, 55 of which were culture-positive for salmonellae. Both assays were 100% sensitive and specific when cultured isolates of the battery were tested. The pan- Salmonella assay also characterized correctly all salmonellae on the primary isolation agar and was 96% sensitive (53/55) and 96% specific (49/51) when nucleic acid extracts from direct stool specimens were tested. These assays represent potential tools the clinical microbiologist could use to screen suspect isolates or stool specimens for Salmonella.
authors.affiliation: Department of Infectious Diseases, University of, Illinois/OSF Infectious Diseases, Peoria, IL, USA.
authors.forename: John J
authors.initials: JJ
authors.lastname: Farrell
authors.forename: Laura J
authors.initials: LJ
authors.lastname: Doyle
authors.forename: Rachel M
authors.initials: RM
authors.lastname: Addison
authors.forename: L Barth
authors.initials: LB
authors.lastname: Reller
authors.forename: Geraldine S
authors.initials: GS
authors.lastname: Hall
authors.forename: Gary W
authors.initials: GW
authors.lastname: Procop
mesh_terms: D004269:DNA, Bacterial / Q000032:analysis*; D005243:Feces / Q000382:microbiology; D006801:Humans; D008828:Microbiological Techniques / Q000379:methods*; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000379:methods*; D012475:Salmonella / Q000145:classification / Q000235:genetics / Q000276:immunology; D012680:Sensitivity and Specificity; D012703:Serotyping
chemical_list: D004269:DNA, Bacterial