title: PSIbase: a database of Protein Structural Interactome map (PSIMAP).
abstract: Protein Structural Interactome map (PSIMAP) is a global interaction map that describes domain-domain and protein-protein interaction information for known Protein Data Bank structures. It calculates the Euclidean distance to determine interactions between possible pairs of structural domains in proteins. PSIbase is a database and file server for protein structural interaction information calculated by the PSIMAP algorithm. PSIbase also provides an easy-to-use protein domain assignment module, interaction navigation and visual tools. Users can retrieve possible interaction partners of their proteins of interests if a significant homology assignment is made with their query sequences.
  
  
  BACKGROUND
  http://psimap.org and http://psibase.kaist.ac.kr/
authors.affiliation: Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea.
authors.forename: Sungsam
authors.initials: S
authors.lastname: Gong
authors.forename: Giseok
authors.initials: G
authors.lastname: Yoon
authors.forename: Insoo
authors.initials: I
authors.lastname: Jang
authors.forename: Dan
authors.initials: D
authors.lastname: Bolser
authors.forename: Panos
authors.initials: P
authors.lastname: Dafas
authors.forename: Michael
authors.initials: M
authors.lastname: Schroeder
authors.forename: Hansol
authors.initials: H
authors.lastname: Choi
authors.forename: Yoobok
authors.initials: Y
authors.lastname: Cho
authors.forename: Kyungsook
authors.initials: K
authors.lastname: Han
authors.forename: Sunghoon
authors.initials: S
authors.lastname: Lee
authors.forename: Hwanho
authors.initials: H
authors.lastname: Choi
authors.forename: Michael
authors.initials: M
authors.lastname: Lappe
authors.forename: Liisa
authors.initials: L
authors.lastname: Holm
authors.forename: Sangsoo
authors.initials: S
authors.lastname: Kim
authors.forename: Donghoon
authors.initials: D
authors.lastname: Oh
authors.forename: Jonghwa
authors.initials: J
authors.lastname: Bhak
mesh_terms: D001665:Binding Sites; D003196:Computer Graphics; D003198:Computer Simulation; D030562:Databases, Protein; D020407:Internet; D008954:Models, Biological; D008956:Models, Chemical; D008958:Models, Molecular; D011485:Protein Binding; D011487:Protein Conformation; D025941:Protein Interaction Mapping / Q000379:methods*; D011506:Proteins / Q000032:analysis / Q000737:chemistry* / Q000378:metabolism*; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D017386:Sequence Homology, Amino Acid; D014584:User-Computer Interface
chemical_list: D011506:Proteins