MIPS bacterial genomes functional annotation benchmark dataset.
BACKGROUND
Any development of new methods for automatic functional annotation of proteins according to their sequences requires high-quality data (as benchmark) as well as tedious preparatory work to generate sequence parameters required as input data for the machine learning methods. Different program settings and incompatible protocols make a comparison of the analyzed methods difficult.


RESULTS
The MIPS Bacterial Functional Annotation Benchmark dataset (MIPS-BFAB) is a new, high-quality resource comprising four bacterial genomes manually annotated according to the MIPS functional catalogue (FunCat). These resources include precalculated sequence parameters, such as sequence similarity scores, InterPro domain composition and other parameters that could be used to develop and benchmark methods for functional annotation of bacterial protein sequences. These data are provided in XML format and can be used by scientists who are not necessarily experts in genome annotation.


BACKGROUND
BFAB is available at http://mips.gsf.de/proj/bfab
Tetko
Igor V
IV
Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, D-85764 Neuherberg, Germany. i.tetko@gsf.de
Brauner
Barbara
B
Dunger-Kaltenbach
Irmtraud
I
Frishman
Goar
G
Montrone
Corinna
C
Fobo
Gisela
G
Ruepp
Andreas
A
Antonov
Alexey V
AV
Surmeli
Dimitrij
D
Mewes
Hans-Wernen
HW
D001426:Bacterial Proteins / Q000737:chemistry* / Q000145:classification / Q000235:genetics*; D019985:Benchmarking / Q000379:methods*; D002874:Chromosome Mapping / Q000379:methods*; D003628:Database Management Systems; D030562:Databases, Protein; D004282:Documentation / Q000379:methods*; D016680:Genome, Bacterial; D016247:Information Storage and Retrieval / Q000379:methods; D020407:Internet
D001426:Bacterial Proteins