PSIbase: a database of Protein Structural Interactome map (PSIMAP).
Protein Structural Interactome map (PSIMAP) is a global interaction map that describes domain-domain and protein-protein interaction information for known Protein Data Bank structures. It calculates the Euclidean distance to determine interactions between possible pairs of structural domains in proteins. PSIbase is a database and file server for protein structural interaction information calculated by the PSIMAP algorithm. PSIbase also provides an easy-to-use protein domain assignment module, interaction navigation and visual tools. Users can retrieve possible interaction partners of their proteins of interests if a significant homology assignment is made with their query sequences.


BACKGROUND
http://psimap.org and http://psibase.kaist.ac.kr/
Gong
Sungsam
S
Biomatics Lab, Department of BioSystems, KAIST, Daejeon, Korea.
Yoon
Giseok
G
Jang
Insoo
I
Bolser
Dan
D
Dafas
Panos
P
Schroeder
Michael
M
Choi
Hansol
H
Cho
Yoobok
Y
Han
Kyungsook
K
Lee
Sunghoon
S
Choi
Hwanho
H
Lappe
Michael
M
Holm
Liisa
L
Kim
Sangsoo
S
Oh
Donghoon
D
Bhak
Jonghwa
J
D001665:Binding Sites; D003196:Computer Graphics; D003198:Computer Simulation; D030562:Databases, Protein; D020407:Internet; D008954:Models, Biological; D008956:Models, Chemical; D008958:Models, Molecular; D011485:Protein Binding; D011487:Protein Conformation; D025941:Protein Interaction Mapping / Q000379:methods*; D011506:Proteins / Q000032:analysis / Q000737:chemistry* / Q000378:metabolism*; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D017386:Sequence Homology, Amino Acid; D014584:User-Computer Interface
D011506:Proteins