title: Mapping water quality and substrate cover in optically complex coastal and reef waters: an integrated approach.
abstract: Sustainable management of coastal and coral reef environments requires regular collection of accurate information on recognized ecosystem health indicators. Satellite image data and derived maps of water column and substrate biophysical properties provide an opportunity to develop baseline mapping and monitoring programs for coastal and coral reef ecosystem health indicators. A significant challenge for satellite image data in coastal and coral reef water bodies is the mixture of both clear and turbid waters. A new approach is presented in this paper to enable production of water quality and substrate cover type maps, linked to a field based coastal ecosystem health indicator monitoring program, for use in turbid to clear coastal and coral reef waters. An optimized optical domain method was applied to map selected water quality (Secchi depth, Kd PAR, tripton, CDOM) and substrate cover type (seagrass, algae, sand) parameters. The approach is demonstrated using commercially available Landsat 7 Enhanced Thematic Mapper image data over a coastal embayment exhibiting the range of substrate cover types and water quality conditions commonly found in sub-tropical and tropical coastal environments. Spatially extensive and quantitative maps of selected water quality and substrate cover parameters were produced for the study site. These map products were refined by interactions with management agencies to suit the information requirements of their monitoring and management programs.
authors.affiliation: Cooperative Research Centre for Coastal Zone, Estuary and Waterways Management, Brisbane, Queensland 4069, Australia. s.phinn@uq.edu.au
authors.forename: S R
authors.initials: SR
authors.lastname: Phinn
authors.forename: A G
authors.initials: AG
authors.lastname: Dekker
authors.forename: V E
authors.initials: VE
authors.lastname: Brando
authors.forename: C M
authors.initials: CM
authors.lastname: Roelfsema
mesh_terms: D000818:Animals; D037421:Anthozoa; D017753:Ecosystem; D004784:Environmental Monitoring / Q000379:methods*; D055095:Optics and Photonics; D011793:Queensland; D018531:Spacecraft; D014329:Tropical Climate; D014873:Water Pollutants / Q000032:analysis*
chemical_list: D014873:Water Pollutants