title: BIOLUMBASE--the database of natural and transgenic bioluminescent organisms.
abstract: The Institute of Biophysics SB RAS hosts and maintains a specialized collection of luminous bacteria (CCIBSO 836) containing over 700 strains isolated in various regions of the world's oceans. The culture collection is a source of lux genes and biologically active substances. The wide application of bioluminescence in medicine and ecology has given importance to analysing information on the structure and functioning of bioluminescence systems in natural and transgenic microorganisms, as well as on their features that are closely interrelated with bioluminescence. The aims of our BIOLUMBASE database are: gathering information on microorganisms with lux genes, their analysis and free access, and distribution of this data throughout the global network. The database includes two sections, natural and transgenic luminous microorganisms, and is updated by our own experimental results, the published literature and internet resources. For the future, a publicly available internet site for BIOLUMBASE is planned. This will list the strains and provide comprehensive information on the properties and functions of luminous bacteria, the mechanisms of regulation of bioluminescence systems, constructs with lux genes, and applications of bioluminescence in microbiology, ecology, medicine and biotechnology. It is noteworthy that this database will also be useful for evaluation of biological hazards of transgenic strains. Users will be able to carry out bibliographic and strain searches starting from any feature of interest.
authors.affiliation: Institute of Biophysics, Russian Academy of Sciences, Siberian Branch, Krasnoyarsk 660036, Russia. ccibso@ibp.ru
authors.forename: Svetlana E
authors.initials: SE
authors.lastname: Medvedeva
authors.forename: Anatoly
authors.initials: A
authors.lastname: Boyandin
authors.forename: Yuly
authors.initials: Y
authors.lastname: Lankin
authors.forename: Dmitry
authors.initials: D
authors.lastname: Kotov
authors.forename: Emma
authors.initials: E
authors.lastname: Rodicheva
authors.forename: Lyudmila
authors.initials: L
authors.lastname: Popova
mesh_terms: D001419:Bacteria / Q000235:genetics / Q000378:metabolism*; D001426:Bacterial Proteins / Q000235:genetics / Q000378:metabolism; D016208:Databases, Factual; D004463:Ecology; D049449:Luminescence; D008164:Luminescent Proteins / Q000235:genetics / Q000378:metabolism*; D008386:Marine Biology; D030781:Organisms, Genetically Modified / Q000502:physiology*; D010776:Photobacterium / Q000235:genetics / Q000302:isolation & purification; D019076:Transgenes / Q000502:physiology
chemical_list: D001426:Bacterial Proteins; D008164:Luminescent Proteins