title: A novel assay method for an amino acid racemase reaction based on circular dichroism.
abstract: We have established a novel assay method based on circular dichroism that can be used for the kinetic study of the activity of amino acid racemases, such as ALR (alanine racemase). Although an enzyme-coupled assay method has been used to measure racemase activity, the CD method is superior to the enzyme assay because it can accurately determine the immediate changes of an enantiomer on racemization between its L- and D-forms. The enzyme-coupled assay requires D-amino acid oxidase, which is inactivated by an inhibitor of ALR, D-cycloserine. This indicates that the inhibitory kinetic study for ALR with D-cycloserine by the enzyme-coupled assay method is restricted to the analysis of only the reaction resulting in the formation of L-Ala from D-Ala. However, since the CD assay does not require the coupled enzyme, it can be used to comprehensively evaluate the reactions that result in the formation both of D-Ala from L-Ala and of L-Ala from D-Ala at several substrate concentrations. Streptomyces ALR also catalyses the formation of D-Ser from L-Ser and of L-Ser from D-Ser, but the catalytic constants (kcat) are 4- and 10-fold lower than those for the formation of D-Ala from L-Ala and of L-Ala from D-Ala respectively.
authors.affiliation: Department of Molecular Microbiology and Biotechnology, Graduate School of Biomedical Sciences, Hiroshima University, Kasumi 1-2-3, Hiroshima 734-8551, Japan.
authors.forename: Masafumi
authors.initials: M
authors.lastname: Noda
authors.forename: Yasuyuki
authors.initials: Y
authors.lastname: Matoba
authors.forename: Takanori
authors.initials: T
authors.lastname: Kumagai
authors.forename: Masanori
authors.initials: M
authors.lastname: Sugiyama
mesh_terms: D000409:Alanine / Q000378:metabolism; D000411:Alanine Racemase / Q000378:metabolism*; D002942:Circular Dichroism / Q000379:methods*; D004926:Escherichia coli / Q000201:enzymology; D007700:Kinetics; D012694:Serine / Q000378:metabolism; D013302:Streptomyces / Q000201:enzymology
chemical_list: D012694:Serine; D000411:Alanine Racemase; D000409:Alanine