HCPM--program for hierarchical clustering of protein models.
HCPM is a tool for clustering protein structures from comparative modeling, ab initio structure prediction, etc. A hierarchical clustering algorithm is designed and tested, and a heuristic is provided for an optimal cluster selection. The method has been successfully tested during the CASP6 experiment.
Gront
Dominik
D
Faculty of Chemistry, Warsaw University Pasteura 1, 02-093 Warsaw, Poland. dgront@chem.uw.edu.pl
Kolinski
Andrzej
A
D000465:Algorithms; D016000:Cluster Analysis; D003198:Computer Simulation; D020407:Internet; D008956:Models, Chemical; D008958:Models, Molecular; D011506:Proteins / Q000032:analysis / Q000737:chemistry*; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software; D014584:User-Computer Interface
D011506:Proteins