Simultaneous classification and feature clustering using discriminant vector quantization with applications to microarray data analysis.
In many applications of supervised learning, automatic feature clustering is often desirable for a better understanding of the interaction among the various features as well as the interplay between the features and the class labels. In addition, for high dimensional data sets, feature clustering has the potential for improvement in classification accuracy and reduction in computational complexity. In this paper, a method is developed for simultaneous classification and feature clustering by extending discriminant vector quantization (DVQ), a prototype classification method derived from the principle of minimum description length using source coding techniques. The method incorporates feature clustering with classification performed by fusing features in the same clusters. To illustrate its effectiveness, the method has been applied to microarray gene expression data for human lymphoma classification. It is demonstrated that incorporating feature clustering improves classification accuracy, and the clusters generated match well with biological meaningful gene expression signature groups.
Li
Jia
J
Statistics Department, Penn State Univ, PA 16802, USA. jiali@stat.psu.edu
Zha
Hongyuan
H
D000465:Algorithms; D001185:Artificial Intelligence; D014408:Biomarkers, Tumor / Q000235:genetics*; D016000:Cluster Analysis; D003936:Diagnosis, Computer-Assisted / Q000379:methods; D016002:Discriminant Analysis; D020869:Gene Expression Profiling / Q000379:methods*; D020022:Genetic Predisposition to Disease / Q000235:genetics; D005820:Genetic Testing / Q000379:methods; D006801:Humans; D008223:Lymphoma / Q000175:diagnosis* / Q000235:genetics*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D010363:Pattern Recognition, Automated / Q000379:methods*
D014408:Biomarkers, Tumor