A web-based three-dimensional protein retrieval system by matching visual similarity.
A web-based three-dimensional (3D) protein retrieval system is available for protein structure data including all PDB and FSSP dataset. In this system, we use a visual-based matching method to compare the protein structure from multiple viewpoints. It takes less than three seconds for each query with 90% accuracy on an average.
Yeh
Jeng-Sheng
JS
Department of Computer Science and Information Engineering, National Taiwan University Taipei 106, Taiwan. jsyeh@cmlab.csie.ntu.edu.tw
Chen
Ding-Yun
DY
Chen
Bing-Yu
BY
Ouhyoung
Ming
M
D000465:Algorithms; D003196:Computer Graphics; D003198:Computer Simulation; D030562:Databases, Protein; D020407:Internet; D008956:Models, Chemical; D008958:Models, Molecular; D011487:Protein Conformation; D011506:Proteins / Q000032:analysis / Q000737:chemistry* / Q000145:classification; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D017386:Sequence Homology, Amino Acid; D012984:Software; D014584:User-Computer Interface
D011506:Proteins