Rapid quantum mechanical models for the computational estimation of C-H bond dissociation energies as a measure of metabolic stability.
Several relatively inexpensive levels of theory are surveyed together with alternative algorithmic methods for the estimation of C-H bond dissociation energies (BDEs), such energies being useful for the prediction of metabolic stability in drug-like molecules. In particular, bond stretching potentials of several C-H bonds are computed using the AM1, PM3, HF/MIDI!, and B3LYP/MIDI! levels of electronic structure theory, and selected points are fit to Morse and parabolic potentials. BDEs computed by an AM1 fit to the Morse function show the smallest mean unsigned error in prediction (+/- 3-4 kcal/mol) over 32 diverse C-H bonds. An alternative method for correlating the AM1 parabolic force constant from a two-point unrelaxed potential provides only a slightly decreased accuracy and is computationally particularly inexpensive. Both methods should prove to be useful for the rapid in silico screening of drug-like molecules for metabolic stability to C-H bond oxidizing enzymes.
Lewin
John L
JL
Department of Chemistry and Supercomputer Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, USA.
Cramer
Christopher J
CJ
D002244:Carbon; D004355:Drug Stability; D006838:Hydrocarbons / Q000737:chemistry*; D006860:Hydrogen Bonding; D007700:Kinetics; D008962:Models, Theoretical; D011789:Quantum Theory; D013816:Thermodynamics
D006838:Hydrocarbons; D002244:Carbon