title: Comparison of three methods of DNA extraction from cold-smoked salmon and impact of physical treatments.
abstract: OBJECTIVE
  To compare three bacterial DNA extraction procedures on cold-smoked salmon (CSS) and assess the impact on their efficiency of two physical treatments of the food matrix, ionizing irradiation and freezing.
  
  
  RESULTS
  As molecular methods for bacterial detection have become an important analytical tool, we compared bacterial DNA extraction procedures on CSS. Working with frozen and irradiated CSS, we obtained negative responses from samples known to be highly contaminated. Thus, we decided to study the impact of these two physical treatments on bacterial DNA extraction procedures. The efficiency of bacterial DNA extraction directly from the fish matrix suspension was measured by an rpoB PCR-based reaction. The results demonstrated that the DNeasy tissue extraction kit (Qiagen, Courtaboeuf, France) was the most efficient and reproducible method. We also showed that freezing and ionizing irradiation have a negative impact on DNA extraction. This was found probably not to be due to inhibition as the PCR reaction remained negative after adding BSA to the PCR mix reaction.
  
  
  CONCLUSIONS
  The extraction kit was the most efficient method. Physical treatments were shown to hamper bacterial DNA extraction.
  
  
  CONCLUSIONS
  Attention must be paid to molecular bacterial detection on food products subject to freezing or to ionizing irradiation.
authors.affiliation: Laboratoire de Génie Alimentaire, IFREMER Nantes, Rue de l'Ile d'Yeu, Nantes cedex, France.
authors.forename: S
authors.initials: S
authors.lastname: Giacomazzi
authors.forename: F
authors.initials: F
authors.lastname: Leroi
authors.forename: J-J
authors.initials: JJ
authors.lastname: Joffraud
mesh_terms: D000818:Animals; D001431:Bacteriological Techniques; D004269:DNA, Bacterial / Q000032:analysis*; D005506:Food Contamination; D005514:Food Irradiation; D005519:Food Preservation; D005615:Freezing; D016133:Polymerase Chain Reaction; D011839:Radiation, Ionizing; D012474:Salmon
chemical_list: D004269:DNA, Bacterial