title: EGene: a configurable pipeline generation system for automated sequence analysis.
abstract: EGene is a generic, flexible and modular pipeline generation system that makes pipeline construction a modular job. EGene allows for third-party programs to be used and integrated according to the needs of distinct projects and without any previous programming or formal language experience being required. EGene comes with CoEd, a visual tool to facilitate pipeline construction and documentation. A series of components to build pipelines for sequence processing is provided.
  
  
  BACKGROUND
  http://www.lbm.fmvz.usp.br/egene/
  
  
  BACKGROUND
  alan@ime.usp.br; argruber@usp.br
  
  
  BACKGROUND
  http://www.lbm.fmvz.usp.br/egene/
authors.affiliation: Depto. de Ciências da Computação, Instituto de Matemática e Estatística São Paulo, SP, 05508-900, Brazil. alan@ime.usp.br
authors.forename: Alan M
authors.initials: AM
authors.lastname: Durham
authors.forename: André Y
authors.initials: AY
authors.lastname: Kashiwabara
authors.forename: Fernando T G
authors.initials: FT
authors.lastname: Matsunaga
authors.forename: Paulo H
authors.initials: PH
authors.lastname: Ahagon
authors.forename: Flávia
authors.initials: F
authors.lastname: Rainone
authors.forename: Leonardo
authors.initials: L
authors.lastname: Varuzza
authors.forename: Arthur
authors.initials: A
authors.lastname: Gruber
mesh_terms: D002874:Chromosome Mapping / Q000379:methods*; D003196:Computer Graphics; D003628:Database Management Systems; D030561:Databases, Nucleic Acid; D016247:Information Storage and Retrieval / Q000379:methods; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D018511:Systems Integration; D014584:User-Computer Interface