EGene: a configurable pipeline generation system for automated sequence analysis.
EGene is a generic, flexible and modular pipeline generation system that makes pipeline construction a modular job. EGene allows for third-party programs to be used and integrated according to the needs of distinct projects and without any previous programming or formal language experience being required. EGene comes with CoEd, a visual tool to facilitate pipeline construction and documentation. A series of components to build pipelines for sequence processing is provided.


BACKGROUND
http://www.lbm.fmvz.usp.br/egene/


BACKGROUND
alan@ime.usp.br; argruber@usp.br


BACKGROUND
http://www.lbm.fmvz.usp.br/egene/
Durham
Alan M
AM
Depto. de Ciências da Computação, Instituto de Matemática e Estatística São Paulo, SP, 05508-900, Brazil. alan@ime.usp.br
Kashiwabara
André Y
AY
Matsunaga
Fernando T G
FT
Ahagon
Paulo H
PH
Rainone
Flávia
F
Varuzza
Leonardo
L
Gruber
Arthur
A
D002874:Chromosome Mapping / Q000379:methods*; D003196:Computer Graphics; D003628:Database Management Systems; D030561:Databases, Nucleic Acid; D016247:Information Storage and Retrieval / Q000379:methods; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software; D018511:Systems Integration; D014584:User-Computer Interface