Stochastic reaction-diffusion simulation with MesoRD.
MesoRD is a tool for stochastic simulation of chemical reactions and diffusion. In particular, it is an implementation of the next subvolume method, which is an exact method to simulate the Markov process corresponding to the reaction-diffusion master equation.


BACKGROUND
MesoRD is free software, written in C++ and licensed under the GNU general public license (GPL). MesoRD runs on Linux, Mac OS X, NetBSD, Solaris and Windows XP. It can be downloaded from http://mesord.sourceforge.net.


BACKGROUND
johan.elf@icm.uu.se; johan.hattne@embl-hamburg.de


BACKGROUND
'MesoRD User's Guide' and other documents are available at http://mesord.sourceforge.net.
Hattne
Johan
J
Department of Cell and Molecular Biology, BMC, Uppsala University, 75124 Uppsala, Sweden. johan.hattne@embl-hamburg.de
Fange
David
D
Elf
Johan
J
D000465:Algorithms; D003198:Computer Simulation; D004058:Diffusion; D008956:Models, Chemical; D015233:Models, Statistical; D012984:Software; D013269:Stochastic Processes