title: Lipid biomarkers and carbon isotope signatures of a microbial (Beggiatoa) mat associated with gas hydrates in the gulf of Mexico.
abstract: White and orange mats are ubiquitous on surface sediments associated with gas hydrates and cold seeps in the Gulf of Mexico. The goal of this study was to determine the predominant pathways for carbon cycling within an orange mat in Green Canyon (GC) block GC 234 in the Gulf of Mexico. Our approach incorporated laser-scanning confocal microscopy, lipid biomarkers, stable carbon isotopes, and 16S rRNA gene sequencing. Confocal microscopy showed the predominance of filamentous microorganisms (4 to 5 mum in diameter) in the mat sample, which are characteristic of Beggiatoa. The phospholipid fatty acids extracted from the mat sample were dominated by 16:1omega7c/t (67%), 18:1omega7c (17%), and 16:0 (8%), which are consistent with lipid profiles of known sulfur-oxidizing bacteria, including Beggiatoa. These results are supported by the 16S rRNA gene analysis of the mat material, which yielded sequences that are all related to the vacuolated sulfur-oxidizing bacteria, including Beggiatoa, Thioploca, and Thiomargarita. The delta13C value of total biomass was -28.6 per thousand; those of individual fatty acids were -29.4 to -33.7 per thousand. These values suggested heterotrophic growth of Beggiatoa on organic substrates that may have delta13C values characteristic of crude oil or on their by-products from microbial degradation. This study demonstrated that integrating lipid biomarkers, stable isotopes, and molecular DNA could enhance our understanding of the metabolic functions of Beggiatoa mats in sulfide-rich marine sediments associated with gas hydrates in the Gulf of Mexico and other locations.
authors.affiliation: Department of Marine Sciences and Savannah River Ecology Laboratory, University of Georgia, Drawer E, Aiken, SC 29802, USA. zhang@srel.edu
authors.forename: Chuanlun L
authors.initials: CL
authors.lastname: Zhang
authors.forename: Zhiyong
authors.initials: Z
authors.lastname: Huang
authors.forename: James
authors.initials: J
authors.lastname: Cantu
authors.forename: Richard D
authors.initials: RD
authors.lastname: Pancost
authors.forename: Robin L
authors.initials: RL
authors.lastname: Brigmon
authors.forename: Timothy W
authors.initials: TW
authors.lastname: Lyons
authors.forename: Roger
authors.initials: R
authors.lastname: Sassen
mesh_terms: D002247:Carbon Isotopes / Q000378:metabolism*; D004275:DNA, Ribosomal / Q000032:analysis; D004586:Electrophoresis / Q000379:methods; D005740:Gases / Q000378:metabolism; D019015:Geologic Sediments / Q000382:microbiology; D050356:Lipid Metabolism; D018613:Microscopy, Confocal; D010578:Petroleum; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012623:Seawater / Q000382:microbiology; D017422:Sequence Analysis, DNA; D013440:Sulfides / Q000378:metabolism; D041962:Thiotrichaceae / Q000145:classification* / Q000235:genetics / Q000254:growth & development / Q000378:metabolism
chemical_list: D002247:Carbon Isotopes; D004275:DNA, Ribosomal; D005740:Gases; D010578:Petroleum; D012336:RNA, Ribosomal, 16S; D013440:Sulfides