title: Absence of strand bias for deletion mutagenesis during chromosomal leading and lagging strand replication in Escherichia coli.
abstract: Investigations were carried out to determine whether both DNA strands involved in Escherichia coli chromosomal DNA replication are replicated with similar accuracy. Experiments consisted of measuring the forward mutation rate from tonB(+) to tonB(-) in pairs of polA deficient strains in which the chromosomal target gene tonB was oriented in the two possible directions relative to the origin of replication, oriC. Within these pairs, the tonB sequence would be subjected to leading strand replication in one orientation and to lagging strand replication in the other. The most common tonB mutations in the polA1 strain were deletions followed by frameshifts. Among the deletions, a strong hotspot site with a 13-base deletion in the polA1 strains accounted for 18 of the 33 deletions in the one orientation, and 31 of the 58 deletions in the other. The results suggested that the two strands were replicated with equal or similar accuracy for deletion formation.
authors.affiliation: Graduate School of Life Sciences, Tohoku University, Sendai, Japan.
authors.forename: Yuki
authors.initials: Y
authors.lastname: Nagata
authors.forename: Genta
authors.initials: G
authors.lastname: Kawaguchi
authors.forename: Yu-ichiro
authors.initials: Y
authors.lastname: Tago
authors.forename: Masaru
authors.initials: M
authors.lastname: Imai
authors.forename: Takashi
authors.initials: T
authors.lastname: Watanabe
authors.forename: Shigehisa
authors.initials: S
authors.lastname: Sakurai
authors.forename: Makoto
authors.initials: M
authors.lastname: Ihara
authors.forename: Masakado
authors.initials: M
authors.lastname: Kawata
authors.forename: Kazuo
authors.initials: K
authors.lastname: Yamamoto
mesh_terms: D004256:DNA Polymerase I / Q000235:genetics / Q000378:metabolism*; D004261:DNA Replication / Q000235:genetics / Q000502:physiology*; D004269:DNA, Bacterial / Q000235:genetics / Q000378:metabolism*; D004926:Escherichia coli / Q000235:genetics / Q000502:physiology*; D029968:Escherichia coli Proteins / Q000235:genetics / Q000378:metabolism*; D008565:Membrane Proteins / Q000235:genetics / Q000378:metabolism*; D018741:Replication Origin / Q000235:genetics / Q000502:physiology; D017384:Sequence Deletion / Q000235:genetics / Q000502:physiology*
chemical_list: D004269:DNA, Bacterial; D029968:Escherichia coli Proteins; D008565:Membrane Proteins; C489181:tonB protein, E coli; D004256:DNA Polymerase I