title: Novel reference gene, High-mobility-group protein I/Y, used in qualitative and real-time quantitative polymerase chain reaction detection of transgenic rapeseed cultivars.
abstract: With the development of transgenic crops, regulations to label the genetically modified organisms (GMOs) and their derived products have been issued in many countries. Polymerase chain reaction (PCR) methods are thought to be reliable and useful techniques for qualitative and quantitative detection of GMOs. These methods are generally needed to amplify the transgene and compare the amplified results with that of a corresponding reference gene to get the reliable results. Specific primers were developed for the rapeseed (Brassica napus), high-mobility-group protein I/Y(HMG-I/Y) single-copy gene and PCR cycling conditions suitable for the use of this sequence as an endogenous reference gene in both qualitative and quantitative PCR assays. Both methods were assayed with 15 different rapeseed varieties, and identical amplified products were obtained with all of them. No amplification was observed when templates were the DNA samples from the other species of Brassica genus or other species, such as broccoli, stem mustard, cauliflower, Chinese cabbage, cabbage, sprouts, Arabidopsis thaliana, carrot, tobacco, soybean, mung bean, tomato, pepper, eggplant, plum, wheat, maize, barley, rice, lupine, and sunflower. This system was specific for rapeseed. Limits of detection and quantitation in qualitative and quantitative PCR systems were about 13 pg DNA (about 10 haploid genomes) and about 1.3 pg DNA (about 1 haploid genome), respectively. To further test the feasibility of this HMG-I/Y gene as an endogenous reference gene, samples containing transgenic rapeseed GT73 with the inserted glyphosate oxidoreductase (GOX) gene were quantitated. These demonstrated that the endogenous PCR detection systems were applicable to the qualitative and quantitative detection of transgenic rapeseed.
authors.affiliation: Nanjing University, Department of Biological Science and Technology, 22 Hankou Rd, Nanjing, People's Republic of China.
authors.forename: Haibo
authors.initials: H
authors.lastname: Weng
authors.forename: Litao
authors.initials: L
authors.lastname: Yang
authors.forename: Zhili
authors.initials: Z
authors.lastname: Liu
authors.forename: Jiayu
authors.initials: J
authors.lastname: Ding
authors.forename: Aihu
authors.initials: A
authors.lastname: Pan
authors.forename: Dabing
authors.initials: D
authors.lastname: Zhang
mesh_terms: D015139:Blotting, Southern; D029741:Brassica rapa / Q000737:chemistry* / Q000235:genetics*; D017931:DNA Primers; D018744:DNA, Plant / Q000737:chemistry / Q000235:genetics; D005998:Glycine / Q000031:analogs & derivatives* / Q000378:metabolism; D025741:HMGA1a Protein / Q000032:analysis* / Q000235:genetics*; D008969:Molecular Sequence Data; D010944:Plants / Q000235:genetics; D030821:Plants, Genetically Modified / Q000737:chemistry* / Q000235:genetics*; D012015:Reference Standards; D020133:Reverse Transcriptase Polymerase Chain Reaction; D000097797:Glyphosate
chemical_list: D017931:DNA Primers; D018744:DNA, Plant; D005998:Glycine; D025741:HMGA1a Protein; D000097797:Glyphosate