Interaction of Era with the 30S ribosomal subunit implications for 30S subunit assembly.
Era (E. coliRas-like protein) is a highly conserved and essential GTPase in bacteria. It binds to the 16S ribosomal RNA (rRNA) of the small (30S) ribosomal subunit, and its depletion leads to accumulation of an unprocessed precursor of the 16S rRNA. We have obtained a three-dimensional cryo-electron microscopic map of the Thermus thermophilus 30S-Era complex. Era binds in the cleft between the head and platform of the 30S subunit and locks the subunit in a conformation that is not favorable for association with the large (50S) ribosomal subunit. The RNA binding KH motif present within the C-terminal domain of Era interacts with the conserved nucleotides in the 3' region of the 16S rRNA. Furthermore, Era makes contact with several assembly elements of the 30S subunit. These observations suggest a direct involvement of Era in the assembly and maturation of the 30S subunit.
Sharma
Manjuli R
MR
Division of Molecular Medicine, Wadsworth Center, New York State Department of Health, Empire State Plaza, Albany, New York 12201, USA.
Barat
Chandana
C
Wilson
Daniel N
DN
Booth
Timothy M
TM
Kawazoe
Masahito
M
Hori-Takemoto
Chie
C
Shirouzu
Mikako
M
Yokoyama
Shigeyuki
S
Fucini
Paola
P
Agrawal
Rajendra K
RK
D001665:Binding Sites; D020285:Cryoelectron Microscopy; D029968:Escherichia coli Proteins / Q000737:chemistry / Q000378:metabolism* / Q000648:ultrastructure; D019204:GTP-Binding Proteins / Q000737:chemistry / Q000378:metabolism* / Q000648:ultrastructure; D008958:Models, Molecular; D046912:Multiprotein Complexes; D011485:Protein Binding; D011487:Protein Conformation; D017433:Protein Structure, Secondary; D017434:Protein Structure, Tertiary; D021122:Protein Subunits / Q000737:chemistry / Q000378:metabolism*; D012336:RNA, Ribosomal, 16S / Q000378:metabolism* / Q000648:ultrastructure; D016601:RNA-Binding Proteins / Q000737:chemistry / Q000378:metabolism* / Q000648:ultrastructure; D012269:Ribosomal Proteins / Q000737:chemistry / Q000378:metabolism* / Q000648:ultrastructure; D016963:Thermus thermophilus / Q000235:genetics / Q000378:metabolism
D029968:Escherichia coli Proteins; D046912:Multiprotein Complexes; D021122:Protein Subunits; D012336:RNA, Ribosomal, 16S; D016601:RNA-Binding Proteins; D012269:Ribosomal Proteins; C068027:era protein, E coli; D019204:GTP-Binding Proteins