title: Non-bridging phosphate oxygen atoms within the tRNA anticodon stem-loop are essential for ribosomal A site binding and translocation.
abstract: The conformation of the anticodon stem-loop of tRNAs required for correct decoding by the ribosome depends on intramolecular and intermolecular interactions that are independent of the tRNA nucleotide sequence. Non-bridging phosphate oxygen atoms have been shown to be critical for the structure and function of several RNAs. However, little is known about the role they play in ribosomal A site binding and translocation of tRNA to the P site. Here, we show that non-bridging phosphate oxygen atoms within the tRNA anticodon stem-loop at positions 33, 35, and 37 are important for A site binding. Those at positions 34 and 36 are not necessary for binding, but are essential for translocation. Our results correlate with structural data, indicating that position 34 interacts with the highly conserved 16S rRNA base G966 and position 36 interacts with the universally conserved tRNA base U33 during translocation to the P site.
authors.affiliation: Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Dr, La Jolla, CA 92093-0314, USA.
authors.forename: Steven S
authors.initials: SS
authors.lastname: Phelps
authors.forename: Simpson
authors.initials: S
authors.lastname: Joseph
mesh_terms: D000926:Anticodon / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D001483:Base Sequence; D007536:Isomerism; D009690:Nucleic Acid Conformation; D010100:Oxygen / Q000378:metabolism*; D010649:Phenylalanine / Q000235:genetics; D010710:Phosphates / Q000378:metabolism*; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012343:RNA, Transfer / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D012270:Ribosomes / Q000737:chemistry / Q000378:metabolism*
chemical_list: D000926:Anticodon; D010710:Phosphates; D012336:RNA, Ribosomal, 16S; D010649:Phenylalanine; D012343:RNA, Transfer; D010100:Oxygen