title: Correlation between the activities of alpha-helical antimicrobial peptides and hydrophobicities represented as RP HPLC retention times.
abstract: PTP7 is a 13-amino acid residue peptide designed from gaegurin 6, an antimicrobial peptide isolated from skin secretions of Rana rugosa. In order to examine the effect of hydrophobicity on antimicrobial activity, a series of PTP7 derivatives were constructed and analyzed the activity against bacteria and artificial membrane. We found that the mean hydrophobicity by simple summation of hydrophobicity of each constituent amino acid did not necessarily describe the hydrophobic property of antimicrobial peptides. The mean hydrophobicity did not show close correlation with the observed hydrophobicity by measuring reverse phase high performance liquid chromatography (RP HPLC) retention time. The observed hydrophobicity represented as RP HPLC retention time correlated well with the activity against artificial membrane and Gram positive bacterial species, such as Staphylococcus aureus, Staphylococcus epidermidis, and Micrococcus luteus, rather than mean hydrophobicity. However, antimicrobial activity against Gram negative bacteria, such as Escherichia coli, did not show correlation with RP HPLC retention time. These data indicate that the RP HPLC retention time should be exploited rather than the mean hydrophobicity in the analysis of the relationship between hydrophobicity and antimicrobial activity.
authors.affiliation: Laboratory of Molecular Genetics, Institute of Molecular Biology and Genetics, Seoul National University, Seoul 151-742, Korea.
authors.forename: Sunkyu
authors.initials: S
authors.lastname: Kim
authors.forename: Sukwon S
authors.initials: SS
authors.lastname: Kim
authors.forename: Byeong Jae
authors.initials: BJ
authors.lastname: Lee
mesh_terms: D029845:Amphibian Proteins / Q000737:chemistry* / Q000494:pharmacology; D000818:Animals; D000900:Anti-Bacterial Agents / Q000737:chemistry* / Q000494:pharmacology; D001419:Bacteria / Q000187:drug effects / Q000254:growth & development; D002851:Chromatography, High Pressure Liquid; D057927:Hydrophobic and Hydrophilic Interactions; D011498:Protein Precursors / Q000737:chemistry* / Q000494:pharmacology; D017433:Protein Structure, Secondary; D011898:Ranidae; D013329:Structure-Activity Relationship
chemical_list: D029845:Amphibian Proteins; D000900:Anti-Bacterial Agents; D011498:Protein Precursors; C119329:gaegurin 6