The effects of Ca2+ binding on the dynamic properties of a designed Ca2+-binding protein.
The effects of Ca(2+) binding on the dynamic properties of Ca(2+)-binding proteins are important in Ca(2+) signaling. To understand the role of Ca(2+) binding, we have successfully designed a Ca(2+)-binding site in the domain 1 of rat CD2 (denoted as Ca.CD2) with the desired structure and retained function. In this study, the backbone dynamic properties of Ca.CD2 have been investigated using (15)N spin relaxation NMR spectroscopy to reveal the effect of Ca(2+) binding on the global and local dynamic properties without the complications of multiple interactive Ca(2+) binding and global conformational change. Like rat CD2 (rCD2) and human CD2 (hCD2), residues involved in the recognition of the target molecule CD48 exhibit high flexibility. Mutations N15D and N17D that introduce the Ca(2+) ligands increase the flexibility of the neighboring residues. Ca(2+)-induced local dynamic changes occur mainly at the residues proximate to the Ca(2+)-binding pocket or the residues in loop regions. The beta-strand B of Ca.CD2 that provides two Asp for the Ca(2+) undergoes an S(2) decrease upon the Ca(2+) binding, while the DE-loop that provides one Asn and one Asp undergoes an S(2) increase. Our study suggests that Ca(2+) binding has a differential effect on the rigidity of the residues depending on their flexibility and location within the secondary structure.
Yang
Wei
W
Department of Chemistry, Center for Drug Design, Georgia State University, Atlanta, Georgia 30303, USA.
Wilkins
Anna L
AL
Li
Shunyi
S
Ye
Yiming
Y
Yang
Jenny J
JJ
D000818:Animals; D015703:Antigens, CD / Q000378:metabolism; D001665:Binding Sites / Q000235:genetics; D018801:CD2 Antigens / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism; D000071178:CD48 Antigen; D002118:Calcium / Q000737:chemistry* / Q000378:metabolism; D002135:Calcium-Binding Proteins / Q000138:chemical synthesis* / Q000235:genetics / Q000378:metabolism; D020832:EF Hand Motifs; D006801:Humans; D019906:Nuclear Magnetic Resonance, Biomolecular; D011487:Protein Conformation; D015202:Protein Engineering; D017433:Protein Structure, Secondary / Q000235:genetics; D017434:Protein Structure, Tertiary / Q000235:genetics; D051381:Rats; D013816:Thermodynamics
D015703:Antigens, CD; D018801:CD2 Antigens; D000071178:CD48 Antigen; C000604065:CD48 protein, human; D002135:Calcium-Binding Proteins; C000604067:Cd48 protein, rat; D002118:Calcium