Efficient recognition of folds in protein 3D structures by the improved PRIDE algorithm.
An improved version of the PRIDE (PRobaility of IDEntity) fold prediction algorithm has been developed, based on more solid statistical basis, fast search capabilities and efficient input structure processing. The new algorithm is effective in identifying protein structures at the 'H' level of the CATH hierarchy.


BACKGROUND
The new algorithm is integrated into the PRIDE2 web servers at http://pride.szbk.u-szeged.hu and http://www.icgeb.org/pride.


BACKGROUND
Detailed documentation and performance evaluation is available in the description section of the PRIDE2 web server.
Gáspári
Zoltán
Z
Bioinformatics Group, Biological Research Center, Hungarian Academy of Sciences, Temesvári krt., 62, Szeged, Hungary.
Vlahovicek
Kristian
K
Pongor
Sándor
S
D000465:Algorithms; D001665:Binding Sites; D003196:Computer Graphics; D003198:Computer Simulation; D020407:Internet; D008956:Models, Chemical; D008958:Models, Molecular; D011485:Protein Binding; D011487:Protein Conformation; D017510:Protein Folding; D011506:Proteins / Q000032:analysis / Q000737:chemistry*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software; D014584:User-Computer Interface
D011506:Proteins