Sulfoxidation mechanisms catalyzed by cytochrome P450 and horseradish peroxidase models: spin selection induced by the ligand.
The sulfoxidation of dimethyl sulfide (DMS), by two different heme-type enzyme models (without the protein), namely, horseradish peroxidase (HRP) and cytochrome P450 (P450), was studied using density functional theory. The models differ from each other by the axial ligand of the iron, which is imidazole in the case of HRP and thiolate in the case of P450. The computational results reveal a concerted oxygen atom transfer to sulfur, with spin-state selection dependent upon the identity of the proximal ligand. In the case of thiolate, the mechanism prefers the high-spin quartet pathway; whereas in the case of imidazole, the mechanism involves two-state reactivity (TSR), with competing quartet and doublet spin states. Furthermore, with thiolate the high-spin transition state, (4)TS(P450), has an upright conformation with a large Fe-O-S(DMS) angle of 147 degrees , whereas the low-spin species, (2)TS(P450), has a small angle and its Fe-O moiety makes an O-N(Por) bond with one of the nitrogen atoms of the porphine macrocycle. By contrast, when the proximal ligand is imidazole, both transition states possess a bent Fe-O bond and an O-N(Por) bond. These spin-state selection patterns obey simple orbital-selection rules, which are manifestations of the electronic nature of the ligand, i.e., the electron-releasing effect of the thiolate vis-a-vis the electron-withdrawal effect of imidazole. Other possible reactivity expressions of the spin-selection patterns are discussed [Dowers, T. S., Rock, D. A., Rock, D. A., Jones, J. P. (2004) J. Am. Chem. Soc. 126, 8868-8869]. Theory shows that intrinsically, HRP should be as reactive as P450 toward sulfoxidation.
Kumar
Devesh
D
Department of Organic Chemistry and the Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel.
de Visser
Sam P
SP
Sharma
Pankaz K
PK
Hirao
Hajime
H
Shaik
Sason
S
D031215:Armoracia / Q000201:enzymology; D001426:Bacterial Proteins / Q000737:chemistry / Q000378:metabolism; D002384:Catalysis; D019295:Computational Biology / Q000379:methods; D003577:Cytochrome P-450 Enzyme System / Q000737:chemistry* / Q000378:metabolism; D004579:Electron Transport; D005290:Ferric Compounds / Q000737:chemistry / Q000378:metabolism; D006418:Heme / Q000737:chemistry / Q000378:metabolism; D006735:Horseradish Peroxidase / Q000737:chemistry* / Q000378:metabolism; D007093:Imidazoles / Q000378:metabolism; D008024:Ligands; D008956:Models, Chemical; D010940:Plant Proteins / Q000737:chemistry / Q000378:metabolism; D016958:Pseudomonas putida / Q000201:enzymology; D013379:Substrate Specificity; D013438:Sulfhydryl Compounds / Q000378:metabolism; D013440:Sulfides / Q000737:chemistry* / Q000378:metabolism; D013816:Thermodynamics
D001426:Bacterial Proteins; D005290:Ferric Compounds; D007093:Imidazoles; D008024:Ligands; D010940:Plant Proteins; D013438:Sulfhydryl Compounds; D013440:Sulfides; D006418:Heme; C029899:imidazole; D003577:Cytochrome P-450 Enzyme System; D006735:Horseradish Peroxidase; C004784:dimethyl sulfide