ProGenGrid: a grid-enabled platform for bioinformatics.
In this paper we describe the ProGenGrid (Proteomics and Genomics Grid) system, developed at the CACT/ISUFI of the University of Lecce which aims at providing a virtual laboratory where e-scientists can simulate biological experiments, composing existing analysis and visualization tools, monitoring their execution, storing the intermediate and final output and finally, if needed, saving the model of the experiment for updating or reproducing it. The tools that we are considering are software components wrapped as Web Services and composed through a workflow. Since bioinformatics applications need to use high performance machines or a high number of workstations to reduce the computational time, we are exploiting a Grid infrastructure for interconnecting wide-spread tools and hardware resources. As an example, we are considering some algorithms and tools needed for drug design, providing them as services, through easy to use interfaces such as the Web and Web service interfaces built using the open source gSOAP Toolkit, whereas as Grid middleware we are using the Globus Toolkit 3.2, exploiting some protocols such as GSI and GridFTP.
Aloisio
Giovanni
G
CACT/ISUFI and SPACI Consortium, University of Lecce, 73100 Lecce, Italy. giovanni.aloisio@unile.it
Cafaro
Massimo
M
Fiore
Sandro
S
Mirto
Maria
M
D019295:Computational Biology / Q000295:instrumentation* / Q000379:methods; D003199:Computer Systems; D015195:Drug Design; D023281:Genomics; D006801:Humans; D007256:Information Systems / Q000295:instrumentation*; D020407:Internet; D007558:Italy; D040901:Proteomics