title: Ab initio molecular dynamics study of glycine intramolecular proton transfer in water.
abstract: We use ab initio molecular-dynamics simulations to quantify structural and thermodynamic properties of a model proton transfer reaction that converts a neutral glycine molecule, stable in the gas phase, to the zwitterion that predominates in aqueous solution. We compute the potential of mean force associated with the direct intramolecular proton transfer event in glycine. Structural analyses show that the average hydration number (N(w)) of glycine is not constant along the reaction coordinate, but rather progresses from N(w) = 5 in the neutral molecule to N(w) = 8 for the zwitterion. We report the free-energy difference between the neutral and charged glycine molecules, and the free-energy barrier to proton transfer. Finally, we identify the approximations inherent in our method and estimate the corresponding corrections to our reported thermodynamic predictions.
authors.affiliation: Sandia National Laboratories, MS 1415 and 0310, Albuquerque, New Mexico 87185, USA. kleung@sandia.gov
authors.forename: Kevin
authors.initials: K
authors.lastname: Leung
authors.forename: Susan B
authors.initials: SB
authors.lastname: Rempe
mesh_terms: D002621:Chemistry / Q000379:methods*; D002627:Chemistry, Physical / Q000379:methods*; D005998:Glycine / Q000737:chemistry*; D007477:Ions; D008958:Models, Molecular; D008962:Models, Theoretical; D011522:Protons; D011789:Quantum Theory; D055672:Static Electricity; D013816:Thermodynamics; D013997:Time Factors; D014867:Water / Q000737:chemistry
chemical_list: D007477:Ions; D011522:Protons; D014867:Water; D005998:Glycine