Complete genome sequence analysis of an iridovirus isolated from the orange-spotted grouper, Epinephelus coioides.
Orange-spotted grouper iridovirus (OSGIV) was the causative agent of serious systemic diseases with high mortality in the cultured orange-spotted grouper, Epinephelus coioides. Here we report the complete genome sequence of OSGIV. The OSGIV genome consists of 112,636 bp with a G+C content of 54%. 121 putative open reading frames (ORF) were identified with coding capacities for polypeptides varying from 40 to 1168 amino acids. The majority of OSGIV shared homologies to other iridovirus genes. Phylogenetic analysis of the major capsid protein, ATPase, cytosine DNA methyl transferase and DNA polymerase indicated that OSGIV was closely related to infectious spleen and kidney necrosis virus (ISKNV) and rock bream iridovirus (RBIV), but differed from lymphocytisvirus and ranavirus. The determination of the genome of OSGIV will facilitate a better understanding of the molecular mechanism underlying the pathogenesis of the OSGIV and may provide useful information to develop diagnosis method and strategies to control outbreak of OSGIV.
Lü
Ling
L
State Key Laboratory for Biocontrol, School of Life Sciences, Zhongshan University, Guangzhou 510275, P. R. China.
Zhou
Song Y
SY
Chen
Cheng
C
Weng
Shao P
SP
Chan
Siu-Ming
SM
He
Jian G
JG
D000818:Animals; D002681:China / Q000453:epidemiology; D004266:DNA Virus Infections / Q000453:epidemiology / Q000662:veterinary / Q000821:virology; D004196:Disease Outbreaks; D005393:Fish Diseases / Q000453:epidemiology / Q000821:virology; D016679:Genome, Viral; D017994:Iridovirus / Q000235:genetics* / Q000302:isolation & purification; D008969:Molecular Sequence Data; D016366:Open Reading Frames; D010473:Perciformes / Q000821:virology*; D010802:Phylogeny