Current status of proteomic standards development.
The generation of proteomic data is becoming ever more high throughput. Both the technologies and experimental designs used to generate and analyze data are becoming increasingly complex. The need for methods by which such data can be accurately described, stored and exchanged between experimenters and data repositories has been recognized. Work by the Proteome Standards Initiative of the Human Proteome Organization has laid the foundation for the development of standards by which experimental design can be described and data exchange facilitated. The Minimum Information About a Proteomic Experiment data model describes both the scope and purpose of a proteomics experiment and encompasses the development of more specific interchange formats such as the mzData model of mass spectrometry. The eXtensible Mark-up Language-MI data interchange format, which allows exchange of molecular interaction data, has already been published and major databases within this field are supplying data downloads in this format.
Orchard
Sandra
S
EMBL Outstation, European Bioinformatics Institute, Wellcome Trust, Genome Campus, Hinxton, Cambridge, UK. orchard@ebi.ac.uk
Taylor
Chris
C
Hermjakob
Henning
H
Zhu
Weimin
W
Julian
Randall
R
Apweiler
Rolf
R
D030562:Databases, Protein; D006801:Humans; D013058:Mass Spectrometry; D020411:Oligonucleotide Array Sequence Analysis; D020543:Proteome / Q000235:genetics / Q000592:standards*; D040901:Proteomics / Q000379:methods* / Q000592:standards* / Q000639:trends; D012958:Societies, Scientific
D020543:Proteome