title: On the mechanisms of glycolytic oscillations in yeast.
abstract: This work concerns the cause of glycolytic oscillations in yeast. We analyse experimental data as well as models in two distinct cases: the relaxation-like oscillations seen in yeast extracts, and the sinusoidal Hopf oscillations seen in intact yeast cells. In the case of yeast extracts, we use flux-change plots and model analyses to establish that the oscillations are driven by on/off switching of phosphofructokinase. In the case of intact yeast cells, we find that the instability leading to the appearance of oscillations is caused by the stoichiometry of the ATP-ADP-AMP system and the allosteric regulation of phosphofructokinase, whereas frequency control is distributed over the reaction network. Notably, the NAD+/NADH ratio modulates the frequency of the oscillations without affecting the instability. This is important for understanding the mutual synchronization of oscillations in the individual yeast cells, as synchronization is believed to occur via acetaldehyde, which in turn affects the frequency of oscillations by changing this ratio.
authors.affiliation: Functional Dynamics Group, Department of Chemistry, University of Copenhagen, Denmark.
authors.forename: Mads F
authors.initials: MF
authors.lastname: Madsen
authors.forename: Sune
authors.initials: S
authors.lastname: Danø
authors.forename: Preben G
authors.initials: PG
authors.lastname: Sørensen
mesh_terms: D000255:Adenosine Triphosphate / Q000378:metabolism; D006019:Glycolysis; D007700:Kinetics; D008954:Models, Biological; D009243:NAD / Q000378:metabolism; D025221:Phosphofructokinases / Q000502:physiology*; D012441:Saccharomyces cerevisiae / Q000502:physiology*
chemical_list: D009243:NAD; D000255:Adenosine Triphosphate; D025221:Phosphofructokinases