title: Querying and computing with BioCyc databases.
abstract: We describe multiple methods for accessing and querying the complex and integrated cellular data in the BioCyc family of databases: access through multiple file formats, access through Application Program Interfaces (APIs) for LISP, Perl and Java, and SQL access through the BioWarehouse relational database.
authors.affiliation: SRI International, Bioinformatics Research Group, EK207 Menlo Park, CA 94025, USA.
authors.forename: Markus
authors.initials: M
authors.lastname: Krummenacker
authors.forename: Suzanne
authors.initials: S
authors.lastname: Paley
authors.forename: Lukas
authors.initials: L
authors.lastname: Mueller
authors.forename: Thomas
authors.initials: T
authors.lastname: Yan
authors.forename: Peter D
authors.initials: PD
authors.lastname: Karp
mesh_terms: D003628:Database Management Systems; D016208:Databases, Factual; D005786:Gene Expression Regulation / Q000502:physiology*; D016247:Information Storage and Retrieval / Q000379:methods*; D008954:Models, Biological; D015398:Signal Transduction / Q000502:physiology*; D012984:Software; D014584:User-Computer Interface