Precise temporal modulation in the response of the SOS DNA repair network in individual bacteria.
The SOS genetic network is responsible for the repair/bypass of DNA damage in bacterial cells. While the initial stages of the response have been well characterized, less is known about the dynamics of the response after induction and its shutoff. To address this, we followed the response of the SOS network in living individual Escherichia coli cells. The promoter activity (PA) of SOS genes was monitored using fluorescent protein-promoter fusions, with high temporal resolution, after ultraviolet irradiation activation. We find a temporal pattern of discrete activity peaks masked in studies of cell populations. The number of peaks increases, while their amplitude reaches saturation, as the damage level is increased. Peak timing is highly precise from cell to cell and is independent of the stage in the cell cycle at the time of damage. Evidence is presented for the involvement of the umuDC operon in maintaining the pattern of PA and its temporal precision, providing further evidence for the role UmuD cleavage plays in effecting a timed pause during the SOS response, as previously proposed. The modulations in PA we observe share many features in common with the oscillatory behavior recently observed in a mammalian DNA damage response. Our results, which reveal a hitherto unknown modulation of the SOS response, underscore the importance of carrying out dynamic measurements at the level of individual living cells in order to unravel how a natural genetic network operates at the systems level.
Friedman
Nir
N
Department of Physics of Complex Systems, The Weizmann Institute of Science, Rehovot, Israel.
Vardi
Shuki
S
Ronen
Michal
M
Alon
Uri
U
Stavans
Joel
J
D001426:Bacterial Proteins / Q000378:metabolism*; D002453:Cell Cycle; D004259:DNA-Directed DNA Polymerase; D004307:Dose-Response Relationship, Radiation; D004926:Escherichia coli / Q000166:cytology / Q000235:genetics* / Q000254:growth & development / Q000528:radiation effects; D029968:Escherichia coli Proteins / Q000378:metabolism; D008856:Microscopy, Fluorescence; D011401:Promoter Regions, Genetic / Q000502:physiology*; D011938:Rec A Recombinases / Q000096:biosynthesis; D013014:SOS Response, Genetics; D014466:Ultraviolet Rays
D001426:Bacterial Proteins; D029968:Escherichia coli Proteins; C078202:UmuC protein, E coli; D011938:Rec A Recombinases; D004259:DNA-Directed DNA Polymerase; C055218:UmuD protein, E coli