Functional analysis of human and chimpanzee promoters.
BACKGROUND
It has long been argued that changes in gene expression may provide an additional and crucial perspective on the evolutionary differences between humans and chimpanzees. To investigate how often expression differences seen in tissues are caused by sequence differences in the proximal promoters, we tested the expression activity in cultured cells of human and chimpanzee promoters from genes that differ in mRNA expression between human and chimpanzee tissues.


RESULTS
Twelve promoters for which the corresponding gene had been shown to be differentially expressed between humans and chimpanzees in liver or brain were tested. Seven showed a significant difference in activity between the human promoter and the orthologous chimpanzee promoter in at least one of the two cell lines used. However, only three of them showed a difference in the same direction as in the tissues.


CONCLUSIONS
Differences in proximal promoter activity are likely to be common between humans and chimpanzees, but are not linked in a simple fashion to gene-expression levels in tissues. This suggests that several genetic differences between humans and chimpanzees might be responsible for a single expression difference and thus that relevant expression differences between humans and chimpanzees will be difficult to predict from cell culture experiments or DNA sequences.
Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, D-04103 Leipzig, Germany. heissig@eva.mpg.de
Florian
F
Heissig
Johannes
J
Krause
Jaroslaw
J
Bryk
Philipp
P
Khaitovich
Wolfgang
W
Enard
Svante
S
Pääbo
D000818:Animals; D045744:Cell Line, Tumor; D003001:Cloning, Molecular; D030561:Databases, Nucleic Acid; D017930:Genes, Reporter; D009447:Neuroblastoma; D002679:Pan troglodytes / Q000235:genetics; D011401:Promoter Regions, Genetic; D014158:Transcription, Genetic; D006801:Humans