MINER: software for phylogenetic motif identification.
MINER is web-based software for phylogenetic motif (PM) identification. PMs are sequence regions (fragments) that conserve the overall familial phylogeny. PMs have been shown to correspond to a wide variety of catalytic regions, substrate-binding sites and protein interfaces, making them ideal functional site predictions. The MINER output provides an intuitive interface for interactive PM sequence analysis and structural visualization. The web implementation of MINER is freely available at http://www.pmap.csupomona.edu/MINER/. Source code is available to the academic community on request.
La
David
D
Department of Biological Sciences, California State Polytechnic University, Pomona, CA 91767, USA.
Livesay
Dennis R
DR
D020816:Amino Acid Motifs; D017124:Conserved Sequence; D020407:Internet; D008958:Models, Molecular; D010802:Phylogeny; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry / Q000145:classification; D016415:Sequence Alignment / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software; D014584:User-Computer Interface
D011506:Proteins