Molecular and vibrational structure of 2-mercapto pyrimidine and 2,4-diamino-6-hydroxy-5-nitroso pyrimidine: FT-IR, FT-Raman and quantum chemical calculations.
The molecular vibrations of 2-mercapto pyrimidine (MP) and 2,4-diamino-6-hydroxy-5-nitroso pyrimidine (DAHNP) were investigated in polycrystalline sample, at room temperature, by Fourier transform infrared (FT-IR) and FT-Raman spectroscopics. In parallel, ab initio and various density functional (DFT) methods were used to determine the geometrical, energetic and vibrational characteristics of MP and DAHNP. On the basis of B3LYP/6-31G* and B3LYP/6-311+G** methods and basis set combinations, a normal mode analysis was performed to assign the various fundamental frequencies according to the total energy distribution (TED). Simulation of infrared and Raman spectra, utilizing the results of these calculations led to excellent overall agreement with observed spectral patterns. The scaled quantum mechanical (SQM) approach applying selective scaling of the DFT force fields was shown to be superior to the scaling method in its ability to ensure correct band assignments and successful simulation of IR and Raman spectra including band polarisations and intensity patterns.
Krishnakumar
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Department of Physics, Periyar University, Salem 636 011, India. vkrishna_kumar@yahoo.com
John Xavier
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D002244:Carbon / Q000737:chemistry; D006859:Hydrogen / Q000737:chemistry; D008956:Models, Chemical; D008968:Molecular Conformation; D015394:Molecular Structure; D009584:Nitrogen / Q000737:chemistry; D009603:Nitroso Compounds / Q000737:chemistry; D011743:Pyrimidines / Q000737:chemistry*; D017550:Spectroscopy, Fourier Transform Infrared; D013059:Spectrum Analysis, Raman; D013438:Sulfhydryl Compounds / Q000737:chemistry; D013455:Sulfur / Q000737:chemistry; D014732:Vibration
C509114:2,4-diamino-6-hydroxy-5-nitroso pyrimidine; D009603:Nitroso Compounds; D011743:Pyrimidines; D013438:Sulfhydryl Compounds; C064001:pyrimidine-2-thiol; D013455:Sulfur; D002244:Carbon; D006859:Hydrogen; C030986:pyrimidine; D009584:Nitrogen