TRAMPLE: the transmembrane protein labelling environment.
TRAMPLE (http://gpcr.biocomp.unibo.it/biodec/) is a web application server dedicated to the detection and the annotation of transmembrane protein sequences. TRAMPLE includes different state-of-the-art algorithms for the prediction of signal peptides, transmembrane segments (both beta-strands and alpha-helices), secondary structure and fast fold recognition. TRAMPLE also includes a complete content management system to manage the results of the predictions. Each user of the server has his/her own workplace, where the data can be stored, organized, accessed and annotated with documents through a simple web-based interface. In this manner, TRAMPLE significantly improves usability with respect to other more traditional web servers.
Fariselli
Piero
P
Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, via Irnerio 42, I-40126, Bologna, Italy.
Finelli
Michele
M
Rossi
Ivan
I
Amico
Mauro
M
Zauli
Andrea
A
Martelli
Pier Luigi
PL
Casadio
Rita
R
D000465:Algorithms; D016494:Computer Security; D003628:Database Management Systems; D020407:Internet; D008565:Membrane Proteins / Q000737:chemistry*; D017510:Protein Folding; D021382:Protein Sorting Signals; D017433:Protein Structure, Secondary; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software
D008565:Membrane Proteins; D021382:Protein Sorting Signals