Hantaviruses in Central South America: phylogenetic analysis of the S segment from HPS cases in Paraná, Brazil.
We sequenced the complete S segments of hantaviruses detected from 12 HPS patients living in southern of Brazil. Samples were obtained from patients diagnosed in different years, in distinct areas, and with a broad spectrum of clinical signs. Despite these differences, all the S proteins of hantavirus from Paraná were identical, except for one amino acid substitution. Phylogenetic analyses of the complete S segment nucleotide and amino acid sequences indicated that hantaviruses from Paraná form a distinct clade from those circulating in South and North America. Other hantaviruses from Brazil were not placed in the same clade. The Oligoryzomys nigripes-associated strains ITA37 and ITA38 from Paraguay were found to belong to the same clade as the hantaviruses from Paraná. Paraguay and Paraná state are located at the same latitude and some ecosystems are similar in both places. The geographic position and common rodent hosts could explain this phylogenetic relationship.
Raboni
Sonia M
SM
Instituto de Biologia Molecular do Paraná, IBMP, Fiocruz, Brazil.
Probst
Christian M
CM
Bordignon
Juliano
J
Zeferino
Aurélio
A
dos Santos
Claudia N Duarte
CN
D001938:Brazil; D016679:Genome, Viral; D006476:Orthohantavirus / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification*; D018804:Hantavirus Pulmonary Syndrome / Q000821:virology*; D006801:Humans; D008297:Male; D010802:Phylogeny; D016133:Polymerase Chain Reaction; D018075:RNA, Complementary / Q000235:genetics; D012367:RNA, Viral / Q000235:genetics; D017385:Sequence Homology; D014764:Viral Proteins / Q000235:genetics
D018075:RNA, Complementary; D012367:RNA, Viral; D014764:Viral Proteins