title: Advancing the molecular diagnosis of thyroid nodules: defining benign lesions by molecular profiling.
abstract: BACKGROUND
  Thyroid nodules are common and most are benign. Previous data from our laboratory and others has suggested that gene profiling can accurately distinguish between benign and malignant thyroid nodules and provide new leads in the study of thyroid tumorigenesis. Current preoperative techniques do not permit distinction between neoplastic and hyperplastic follicular neoplasms. These studies were undertaken to determine whether benign follicular tumors could be subcategorized by molecular profiling.
  
  
  METHODS
  Molecular profiles of 8 follicular adenomas and 8 hyperplastic nodules were analyzed by oligonucleotide microarray analysis. A list of 402 differentially expressed genes was produced based on a comparison of these two groups. Seven additional benign follicular lesions were then added to the analysis. A hierarchical clustering analysis was performed on all 23 samples, utilizing the gene list generated from the test set, to examine the groups for potential differences and the ability of the gene list to distinguish tumor types.
  
  
  RESULTS
  Cluster analysis of all 23 samples produced two distinct groups, one containing the adenomas and one containing the hyperplastic lesions. The analysis was able to identify follicular adenomas with a sensitivity of 84.6% and a specificity of 100%.
  
  
  CONCLUSIONS
  These data indicate that benign thyroid lesions can be separated into distinct groups through molecular profiling. Analysis of the gene list may help further the understanding of thyroid tumorigenesis. Expression profiling may ultimately allow us to distinguish potentially malignant from benign follicular nodules.
authors: Department of Surgery, Weill Medical College of Cornell University, New York, New York, USA.
authors: David J
authors: DJ
authors: Finley
authors: Carrie C
authors: CC
authors: Lubitz
authors: Christina
authors: C
authors: Wei
authors: Baixin
authors: B
authors: Zhu
authors: Thomas J
authors: TJ
authors: Fahey
mesh_terms: D015415:Biomarkers; D002478:Cells, Cultured; D016000:Cluster Analysis; D020869:Gene Expression Profiling; D006801:Humans; D020411:Oligonucleotide Array Sequence Analysis; D020133:Reverse Transcriptase Polymerase Chain Reaction; D013964:Thyroid Neoplasms / Q000175:diagnosis* / Q000235:genetics*; D016606:Thyroid Nodule / Q000175:diagnosis* / Q000235:genetics*
chemical_list: D015415:Biomarkers