Curve-fitting method for direct quantitation of compounds in complex biological mixtures using 1H NMR: application in metabonomic toxicology studies.
A new software tool has been developed that provides automated measurement of signal intensities in NMR spectra of complex mixtures without using data reduction procedures. The algorithm finds best-fit transformations between signals in reference compound spectra and the corresponding signals in analyte spectra. Unlike other algorithms, it is insensitive to variation in chemical shift and can even be used for relative quantitation of compounds whose identities have not yet been established. Additionally, the parameters of the transformation provide information and error metrics that may assist in the streamlining of quality control. The approach presented is general in scope but has been tested by application to peak quantitation in NMR spectra of biofluids. Replicate NMR measurements of solutions of biologically important compounds at various concentrations were made. Further NMR data were collected on urine samples from human, rat, and mouse, which were "spiked" with reference compound solutions at known concentrations. Finally, existing data from an independent toxicology project involving several hundred samples were analyzed, and the consistency of the measurements for metabolites that give multiple NMR signals was assessed. The results of all these tests give confidence that the technique can be used in automated quantitation of compounds in large NMR data sets with minimal operator intervention.
Crockford
D J
DJ
Biological Chemistry, Biomedical Sciences Division, Faculty of Medicine, Imperial College London, SW7 2AZ, UK. d.crockford@imperial.ac.uk
Keun
H C
HC
Smith
L M
LM
Holmes
E
E
Nicholson
J K
JK
D000818:Animals; D019343:Citric Acid / Q000032:analysis* / Q000652:urine; D006626:Hippurates / Q000032:analysis* / Q000652:urine; D006801:Humans; D051379:Mice; D051381:Rats; D013654:Taurine / Q000032:analysis* / Q000652:urine; D014116:Toxicology / Q000379:methods*; D016482:Urinalysis / Q000379:methods; D014556:Urine / Q000737:chemistry
D006626:Hippurates; D013654:Taurine; D019343:Citric Acid; C030514:hippuric acid