title: A computerized cellular imaging system for high content analysis in Monastrol suppressor screens.
abstract: In this paper, we describe a new bioimage informatics system developed for high content screening (HCS) applications with the goal to extract and analyze phenotypic features of hundreds of thousands of mitotic cells simultaneously. The system introduces the algorithm of multi-phenotypic mitotic analysis (MMA) and integrates that with algorithms of correlation analysis and compound clustering used in gene microarray studies. The HCS-MMA system combines different phenotypic information of cellular images obtained from three-channel acquisitions to distinguish and label individual cells at various phases of mitosis. The proposed system can also be used to extract and count the number of cells in each phase in cell-based assay experiments and archive the extracted data into a structured database for more sophisticated statistical and data analysis. To recognize different mitotic phases, binary patterns are set up based on a known biological mitotic spindle model to characterize cellular morphology of actin, microtubules, and DNA. To illustrate its utility, the HCS-MMA system has been applied to screen the quantitative response of 320 different drug compounds in suppressing Monastrol. The results are validated and evaluated by comparing the performance of HCS-MMA with visual analysis, as well as clustering of the drug compounds under evaluation.
authors: Harvard Center for Neurodegeneration and Repair-Center for Bioinformatics, Harvard Medical School, 1249 Boylston, Boston, MA 02215, USA. zhou@crystal.harvard.edu
authors: Xiaobo
authors: X
authors: Zhou
authors: Xinhua
authors: X
authors: Cao
authors: Zach
authors: Z
authors: Perlman
authors: Stephen T C
authors: ST
authors: Wong
mesh_terms: D000465:Algorithms; D000818:Animals; D001185:Artificial Intelligence; D002467:Cell Nucleus / Q000187:drug effects* / Q000648:ultrastructure*; D002478:Cells, Cultured; D004353:Drug Evaluation, Preclinical; D006801:Humans; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D008853:Microscopy / Q000379:methods*; D008938:Mitosis / Q000187:drug effects*; D010363:Pattern Recognition, Automated / Q000379:methods; D011743:Pyrimidines / Q000008:administration & dosage*; D008941:Spindle Apparatus / Q000187:drug effects / Q000648:ultrastructure; D013871:Thiones / Q000008:administration & dosage*
chemical_list: D011743:Pyrimidines; D013871:Thiones; C400223:monastrol