MAVisto: a tool for the exploration of network motifs.
MAVisto is a tool for the exploration of motifs in biological networks. It provides a flexible motif search algorithm and different views for the analysis and visualization of network motifs. These views help to explore interesting motifs: the frequency of motif occurrences can be compared with randomized networks, a list of motifs along with information about structure and number of occurrences depending on the reuse of network elements shows potentially interesting motifs, a motif fingerprint reveals the overall distribution of motifs of a given size and the distribution of a particular motif in the network can be visualized using an advanced layout algorithm.


BACKGROUND
MAVisto is platform independent and available free of charge as a Java webstart application at http://mavisto.ipk-gatersleben.de/


BACKGROUND
schwoebb@ipk-gatersleben.de


BACKGROUND
Can be found at http://mavisto.ipk-gatersleben.de/
Schreiber
Falk
F
Leibniz Institute of Plant Genetics and Crop Plant Research, 06466 Gatersleben, Germany.
Schwöbbermeyer
Henning
H
D003198:Computer Simulation; D005786:Gene Expression Regulation / Q000502:physiology*; D008954:Models, Biological; D020543:Proteome / Q000378:metabolism*; D015398:Signal Transduction / Q000502:physiology*; D012984:Software; D014584:User-Computer Interface
D020543:Proteome