pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.
IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with a large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speed-up behavior.
Minh
Bui Quang
BQ
Albert-Ludwigs-University Freiburg, Germany.
Vinh
Le Sy
le S
von Haeseler
Arndt
A
Schmidt
Heiko A
HA
D000465:Algorithms; D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D003205:Computing Methodologies; D019143:Evolution, Molecular; D006801:Humans; D016013:Likelihood Functions; D008957:Models, Genetic; D008969:Molecular Sequence Data; D010802:Phylogeny; D016415:Sequence Alignment / Q000379:methods*; D017422:Sequence Analysis, DNA / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*