title: Lactobacillus oligofermentans sp. nov., associated with spoilage of modified-atmosphere-packaged poultry products.
abstract: Unidentified lactic acid bacterium (LAB) isolates which had mainly been detected in spoiled, marinated, modified atmosphere packaged (MAP) broiler meat products during two previous studies, were identified and analyzed for their phenotypic properties and the capability to produce biogenic amines. To establish the taxonomic position of these isolates, 16S rRNA gene sequence analysis, numerical analysis of ribopatterns, and DNA-DNA hybridization experiments were done. Unexpectedly for a meat-spoilage-associated LAB, the strains utilized glucose very weakly. According to the API 50 CHL test, arabinose and xylose were the only carbohydrates strongly fermented. None of the six strains tested for production of histamine, tyramine, tryptamine, phenylethylamine, putrescine, and cadaverine were able to produce these main meat-associated biogenic amines in vitro. The polyphasic taxonomy approach showed that these strains represent a new Lactobacillus species. The six isolates sequenced for the 16S rRNA encoding genes shared the highest similarity (95.0 to 96.3%) with the sequence of the Lactobacillus durianis type strain. In the phylogenetic tree, these isolates formed a distinct cluster within the Lactobacillus reuteri group, which also includes L. durianis. Numerical analyses of HindIII-EcoRI ribotypes placed all isolates together in a cluster with seven subclusters well separated from the L. reuteri group reference strains. The DNA-DNA hybridization levels between Lactobacillus sp. nov. isolates varied from 67 to 96%, and low hybridization levels (3 to 15%) were obtained with the L. durianis type strain confirming that these isolates belong to the same species different from L. durianis. The name Lactobacillus oligofermentans sp. nov. is proposed, with strain LMG 22743T (also known as DSM 15707T or AMKR18T) as the type strain.
authors.affiliation: Department of Food and Environmental Hygiene, Faculty of Veterinary Medicine, P.O. Box 66, FIN-00014 University of Helsinki, Helsinki, Finland. joanna.koort@helsinki.fi
authors.forename: Joanna
authors.initials: J
authors.lastname: Koort
authors.forename: Anna
authors.initials: A
authors.lastname: Murros
authors.forename: Tom
authors.initials: T
authors.lastname: Coenye
authors.forename: Susanna
authors.initials: S
authors.lastname: Eerola
authors.forename: Peter
authors.initials: P
authors.lastname: Vandamme
authors.forename: Antti
authors.initials: A
authors.lastname: Sukura
authors.forename: Johanna
authors.initials: J
authors.lastname: Björkroth
mesh_terms: D000818:Animals; D001272:Atmosphere; D015373:Bacterial Typing Techniques; D001482:Base Composition; D001679:Biogenic Amines / Q000378:metabolism*; D002645:Chickens / Q000382:microbiology; D004269:DNA, Bacterial / Q000032:analysis; D018857:Food Packaging / Q000379:methods*; D020459:Genes, rRNA; D007778:Lactobacillus / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification*; D008969:Molecular Sequence Data; D009693:Nucleic Acid Hybridization; D010641:Phenotype; D010802:Phylogeny; D011202:Poultry Products / Q000382:microbiology*; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012338:RNA, Ribosomal, 23S / Q000235:genetics; D021521:Ribotyping; D017422:Sequence Analysis, DNA
chemical_list: D001679:Biogenic Amines; D004269:DNA, Bacterial; D012336:RNA, Ribosomal, 16S; D012338:RNA, Ribosomal, 23S