Lack of association between genetic markers on chromosome 16q22-Q24 and type 1 diabetes in Russian affected families.
OBJECTIVE
To evaluate whether the T1D susceptibility locus on chromosome 16q contributes to the genetic susceptibility to T1D in Russian patients.


METHODS
Thirteen microsatellite markers, spanning a 47-centimorgan genomic region on 16q22-q24 were evaluated for linkage to T1D in 98 Russian multiplex families. Multipoint logarithm of odds (LOD) ratio (MLS) and nonparametric LOD (NPL) values were computed for each marker, using GENEHUNTER 2.1 software. Four microsatellites (D16S422, D16S504, D16S3037, and D16S3098) and 6 biallelic markers in 2 positional candidate genes, ICSBP1 and NQO1, were additionally tested for association with T1D in 114 simplex families, using transmission disequilibrium test (TDT).


RESULTS
A peak of linkage (MLS=1.35, NPL=0.91) was shown for marker D16S750, but this was not significant (P=0.18). The subsequent linkage analysis in the subset of 46 multiplex families carrying a common risk HLA-DR4 haplotype increased peak MLS and NPL values to 1.77 and 1.22, respectively, but showed no significant linkage (P=0.11) to T1D in the 16q22-q24 genomic region. TDT analysis failed to find significant association between these markers and disease, even after the conditioning for the predisposing HLA-DR4 haplotype.


CONCLUSIONS
Our results did not support the evidence for the susceptibility locus to T1D on chromosome 16q22-24 in the Russian family data set. The lack of association could reflect genetic heterogeneity of type 1 diabetes in diverse ethnic groups.
Chistiakov
Dimitry A
DA
Department of Pathology and Laboratory Medicine, University of Cincinnati Medical Center, PO Box 670529, 231 Albert Sabin Way, Cincinnati, OH 45267-0529, USA. dmitry.chistyakov@uc.edu
Chernisheva
Ana
A
Savost'anov
Kirill V
KV
Turakulov
Rustam I
RI
Kuraeva
Tamara L
TL
Dedov
Ivan I
II
Nosikov
Valery V
VV
D000293:Adolescent; D000328:Adult; D001483:Base Sequence; D002885:Chromosomes, Human, Pair 16 / Q000235:genetics*; D017931:DNA Primers; D003922:Diabetes Mellitus, Type 1 / Q000235:genetics*; D005190:Family; D005260:Female; D005819:Genetic Markers; D006801:Humans; D008297:Male; D012426:Russia
D017931:DNA Primers; D005819:Genetic Markers