ORIOGEN: order restricted inference for ordered gene expression data.
ORIOGEN is a user-friendly Java-based software package for selecting and clustering genes according to their profiles across various treatment groups. In particular, ORIOGEN is useful for analyzing data obtained from time-course or dose-response type experiments.


BACKGROUND
The ORIOGEN software can be downloaded freely from http://dir.niehs.nih.gov/dirbb/oriogen/index.cfm


BACKGROUND
peddada@niehs.nih.gov (for statistical questions) and oriogen@constellagroup.com (for software support)


BACKGROUND
ORIOGEN has a full set of help files. Also, an example input file is provided with the download.
Peddada
S
S
Biostatistics Branch, National Institute of Environmental Health Sciences, Durham, NC 27713, USA. peddada@niehs.nih.gov
Harris
S
S
Zajd
J
J
Harvey
E
E
D000465:Algorithms; D020869:Gene Expression Profiling / Q000379:methods*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D012984:Software; D014584:User-Computer Interface