title: Specific roles of 5' RNA secondary structures in stabilizing transcripts in chloroplasts.
abstract: RNA secondary structures, e.g. stem-loops that are often found at the 5' and 3' ends of mRNAs, are in many cases known to be crucial for transcript stability but their role in prolonging the lifetime of transcripts remains elusive. In this study we show for an essential RNA-stabilizing stem-loop at the 5' end of rbcL gene transcripts in Chlamydomonas that it neither prevents ribonucleases from binding to the RNA nor impedes their movement along the RNA strand. The stem-loop has a formative function in that it mediates folding of a short sequence around its base into a specific RNA conformation, consisting of a helical and single-stranded region, i.e. the real structure required for longevity of rbcL transcripts in chloroplasts. Disturbing this structure renders transcripts completely unstable, even if the sequence of this element is not altered. The requirement of a specific 5' sequence and structure for RNA longevity suggests an interaction of this element with a trans-acting factor that protects transcripts from rapid degradation in chloroplasts.
authors.affiliation: Department of Biochemistry and Molecular Biology, University of Valencia Dr Moliner 50, Burjassot, Valencia 46100, Spain.
authors.forename: Loreto
authors.initials: L
authors.lastname: Suay
authors.forename: Maria L
authors.initials: ML
authors.lastname: Salvador
authors.forename: Emnet
authors.initials: E
authors.lastname: Abesha
authors.forename: Uwe
authors.initials: U
authors.lastname: Klein
mesh_terms: D020121:5' Untranslated Regions / Q000737:chemistry*; D000818:Animals; D001483:Base Sequence; D002696:Chlamydomonas / Q000235:genetics; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D020871:RNA Stability; D018747:RNA, Chloroplast / Q000737:chemistry* / Q000378:metabolism; D012333:RNA, Messenger / Q000737:chemistry / Q000378:metabolism*; D012273:Ribulose-Bisphosphate Carboxylase / Q000235:genetics* / Q000378:metabolism
chemical_list: D020121:5' Untranslated Regions; D018747:RNA, Chloroplast; D012333:RNA, Messenger; C101625:RbcL protein, plastid; D012273:Ribulose-Bisphosphate Carboxylase