title: Modeling acid and cationic catalysis on the reactivity of duocarmycins.
abstract: Several catalyzed alkylation reactions of 9-methyladenine by a model [CPI, cyclopropa[c]pyrrolo[3,2-e]indol-4(5H)-one (1)] of duocarmycin anticancer drugs have been compared to the uncatalyzed reaction in gas phase and in water solvent bulk, using density functional theory at the B3LYP level with the 6-31+G(d,p) basis set and C-PCM solvation model. The effect on the CPI reactivity induced by water, formic and phosphoric acids (general acid catalysis), H3O+ (specific acid catalysis), sodium, and ammonium cation complexation (cationic catalysis) has been investigated. The calculations indicate that the specific acid catalysis and the catalysis induced by sodium cation complexation are strong in the gas phase, but solvation reduces them dramatically by electrostatic effects. The specific acid catalysis is still operative, but strongly reduced in water solution, where the reaction barrier is reduced by 8.6 kcal mol(-1) in comparison to the uncatalyzed reaction. The general acid catalysis induced by phosphoric acid (-7.3 kcal mol(-1)) and the catalysis induced by Na+ and NH4+ complexation become competitive, with a catalytic effect of -3.6 and -4.1 kcal mol(-1) in water, respectively. With the specific acid catalysis, the high acidity (low pK(a) value) of the conjugated acid of CPI (CPIH+), computed in water solution using both C-PCM (pK(a) = +2.6) and PCM-B3LYP/6-31+G(d,p) (pK(a) = +2.4) solvation models, suggests that the catalytic effects induced by NH4+ complexation could become more important than the specific acid catalysis and the general catalysis by H3PO4 under physiological conditions, due to concentration effects of the catalysts.
authors.affiliation: Dipartimento di Chimica Organica, Università di Pavia, V.le Taramelli 10, 27100 Pavia Italy. mauro.freccero@unipv.it
authors.forename: Mauro
authors.initials: M
authors.lastname: Freccero
authors.forename: Remo
authors.initials: R
authors.lastname: Gandolfi
mesh_terms: D000225:Adenine / Q000031:analogs & derivatives* / Q000737:chemistry; D000477:Alkylating Agents / Q000737:chemistry*; D000478:Alkylation; D002384:Catalysis; D000080890:Duocarmycins; D007211:Indoles / Q000737:chemistry*; D008958:Models, Molecular; D011760:Pyrrolidinones / Q000737:chemistry; D000644:Quaternary Ammonium Compounds / Q000494:pharmacology; D012964:Sodium / Q000494:pharmacology
chemical_list: D000477:Alkylating Agents; D000080890:Duocarmycins; D007211:Indoles; D011760:Pyrrolidinones; D000644:Quaternary Ammonium Compounds; C013115:9-methyladenine; D012964:Sodium; D000225:Adenine; C058289:duocarmycin A