title: Two different mechanisms for tRNA ribose methylation in Archaea: a short survey.
abstract: The biogenesis of tRNA involves multiple reactions including post-transcriptional modifications and pre-tRNA splicing. Among the three domains of life, only Archaea have two different mechanisms for tRNA ribose methylation: site-specific 2'-O-methyltransferases and C/D guided-RNA machinery. Recently, the first archaeal tRNA 2'-O-methyltransferase, aTrm56, has been characterized. This enzyme is found in all archaeal genomes sequenced so far except one and belongs to the SPOUT family (class IV) of RNA methyltransferases. Its substrate is the conserved C56 in the T-loop of archaeal tRNAs. In the crenarchaeon Pyrobaculum aerophylum, in which no homologue of this methyltransferase is found, a box C/D guide sRNP insures the ribose methylation of C56. Moreover, a new twist on tRNA processing is the finding, in most euryarchaeal tRNAtrp genes, of a box C/D guide RNA within their intron specifying methylation at two sites. Modification of tRNA is an integral part of the complex maturation process of primary tRNA transcripts. In addition to their role in modification, both modification enzymes and C/D guide RNPs may have a chaperone function insuring the precise folding of the mature, functional tRNA.
authors.affiliation: Laboratoire de Microbiologie Génétique et Moléculaire, UMR5100 Université Paul-Sabatier, 118, route de Narbonne, 31062 Toulouse, France. clouet@ibcg.biotoul.fr
authors.forename: Béatrice
authors.initials: B
authors.lastname: Clouet-d'Orval
authors.forename: Christine
authors.initials: C
authors.lastname: Gaspin
authors.forename: Annie
authors.initials: A
authors.lastname: Mougin
mesh_terms: D001105:Archaea / Q000201:enzymology / Q000235:genetics*; D019848:Gene Expression Regulation, Archaeal; D006801:Humans; D008745:Methylation; D009690:Nucleic Acid Conformation; D016372:RNA, Antisense; D019642:RNA, Archaeal / Q000096:biosynthesis / Q000378:metabolism*; D012343:RNA, Transfer / Q000096:biosynthesis*; D012266:Ribose / Q000096:biosynthesis*; D016415:Sequence Alignment; D015265:Site-Specific DNA-Methyltransferase (Adenine-Specific) / Q000737:chemistry; D012359:tRNA Methyltransferases / Q000378:metabolism*
chemical_list: D016372:RNA, Antisense; D019642:RNA, Archaeal; D012266:Ribose; D012343:RNA, Transfer; D012359:tRNA Methyltransferases; D015265:Site-Specific DNA-Methyltransferase (Adenine-Specific)