title: Design and evaluation of 16S rRNA-targeted peptide nucleic acid probes for whole-cell detection of members of the genus Listeria.
abstract: Six fluorescein-labeled peptide nucleic acid oligomers targeting Listeria-specific sequences on the 16S ribosomal subunit were evaluated for their abilities to hybridize to whole cells by fluorescence in situ hybridization (FISH). Four of these probes yielded weak or no fluorescent signals after hybridization and were not investigated further. The remaining two FISH-compatible probes, LisUn-3 and LisUn-11, were evaluated for their reactivities against 22 Listeria strains and 17 other bacterial strains belonging to 10 closely related genera. Hybridization with BacUni-1, a domain-specific eubacterial probe, was used as a positive control for target accessibility in both Listeria spp. and nontarget cells. RNase T1 treatment of select cell types was used to confirm that positive fluorescence responses were rRNA dependent and to examine the extent of nonspecific staining of nontarget cells. Both LisUn-3 and LisUn-11 yielded rapid, bright, and genus-specific hybridizations at probe concentrations of approximately 100 pmol ml(-1). LisUn-11 was the brightest probe and stained all six Listeria species. LisUn-3 hybridized with all Listeria spp. except for L. grayi, for which it had two mismatched bases. A simple ethanolic fixation yielded superior results with Listeria spp. compared to fixation in 10% buffered formalin and was applicable to all cell types studied. This study highlights the advantages of peptide nucleic acid probes for FISH-based detection of gram-positive bacteria and provides new tools for the rapid detection of Listeria spp. These probes may be useful for the routine monitoring of food production environments in support of efforts to control L. monocytogenes.
authors.affiliation: Department of Food Science and Human Nutrition, 2312 Food Sciences Building, Iowa State University, Ames, IA 50011, USA. byron@iastate.edu
authors.forename: Byron F
authors.initials: BF
authors.lastname: Brehm-Stecher
authors.forename: Jens J
authors.initials: JJ
authors.lastname: Hyldig-Nielsen
authors.forename: Eric A
authors.initials: EA
authors.lastname: Johnson
mesh_terms: D001483:Base Sequence; D005434:Flow Cytometry; D020459:Genes, rRNA; D006801:Humans; D017404:In Situ Hybridization, Fluorescence; D008087:Listeria / Q000145:classification / Q000166:cytology / Q000235:genetics / Q000302:isolation & purification*; D008969:Molecular Sequence Data; D015341:Nucleic Acid Probes / Q000235:genetics*; D020135:Peptide Nucleic Acids / Q000235:genetics*; D012336:RNA, Ribosomal, 16S / Q000235:genetics*
chemical_list: D015341:Nucleic Acid Probes; D020135:Peptide Nucleic Acids; D012336:RNA, Ribosomal, 16S