title: Conformational dynamics of phototropin 2 LOV2 domain with the linker upon photoexcitation.
abstract: Conformational dynamics of LOV2 domain of phototropin, a plant blue light photoreceptor, is studied by the pulsed laser induced transient grating (TG) technique. The TG signal of LOV2 without the linker part to the kinase domain exhibits the thermal grating signal due to the heat releasing from the excited state and a weak population grating by the adduct formation. The diffusion coefficients of the adduct product after forming the chemical bond between the chromophore and Cys residue are found to be slightly smaller than that of the reactant, which implies that the core shrinks slightly on the adduct formation. After that change, no significant conformational change was observed. On the other hand, the signal of LOV2 with the linker part to the kinase domain clearly shows very different diffusion coefficients between the original and the adduct species. The large difference indicates significant global conformational change of the protein moiety upon the adduct formation. More interestingly, the diffusion coefficient is found to be time-dependent in the observation time range. The dynamics representing the global conformational change is a clear indication of a spectral silent intermediate between the excited triplet state and the signaling product. From the temporal profile analysis of the signal, the rate of the conformational change is determined to be 2 ms.
authors.affiliation: Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan
authors.forename: Takeshi
authors.initials: T
authors.lastname: Eitoku
authors.forename: Yusuke
authors.initials: Y
authors.lastname: Nakasone
authors.forename: Daisuke
authors.initials: D
authors.lastname: Matsuoka
authors.forename: Satoru
authors.initials: S
authors.lastname: Tokutomi
authors.forename: Masahide
authors.initials: M
authors.lastname: Terazima
mesh_terms: D056931:Cryptochromes; D019281:Dimerization; D005420:Flavoproteins / Q000737:chemistry*; D010446:Peptide Fragments / Q000737:chemistry; D010777:Photochemistry; D011487:Protein Conformation; D017550:Spectroscopy, Fourier Transform Infrared / Q000379:methods; D013816:Thermodynamics
chemical_list: D056931:Cryptochromes; D005420:Flavoproteins; D010446:Peptide Fragments