title: Rapid differentiation among bacteria that cause gastroenteritis by use of low-resolution Raman spectroscopy and PLS discriminant analysis.
abstract: Use of classical microbiological methods to differentiate bacteria that cause gastroenteritis is cumbersome but usually very efficient. The high cost of reagents and the time required for such identifications, approximately four days, could have serious consequences, however, mainly when the patients are children, the elderly, or adults with low resistance. The search for new methods enabling rapid and reagentless differentiation of these microorganisms is, therefore, extremely relevant. In this work the main microorganisms responsible for gastroenteritis, Escherichia coli, Salmonella choleraesuis, and Shigella flexneri, were studied. For each microorganism sixty different dispersions were prepared in physiological solution. The Raman spectra of these dispersions were recorded using a diode laser operating in the near infrared region. Partial least-squares (PLS) discriminant analysis was used to differentiate among the bacteria by use of their respective Raman spectra. This approach enabled correct classification of 100% of the bacteria evaluated and unknown samples from the clinical environment, in less time ( approximately 10 h), by use of a low-cost, portable Raman spectrometer, which can be easily used in intensive care units and clinical environments.
authors.affiliation: Instituto de Química, Universidade de Franca, C.P. 82, 14404-600 Franca, SP, Brazil. camello@unifran.br
authors.forename: Cesar
authors.initials: C
authors.lastname: Mello
authors.forename: Diórginis
authors.initials: D
authors.lastname: Ribeiro
authors.forename: Fábio
authors.initials: F
authors.lastname: Novaes
authors.forename: Ronei J
authors.initials: RJ
authors.lastname: Poppi
mesh_terms: D001419:Bacteria / Q000737:chemistry* / Q000302:isolation & purification*; D002138:Calibration; D004926:Escherichia coli / Q000737:chemistry / Q000302:isolation & purification; D005759:Gastroenteritis / Q000382:microbiology*; D016018:Least-Squares Analysis; D008956:Models, Chemical; D015999:Multivariate Analysis; D012475:Salmonella / Q000737:chemistry / Q000302:isolation & purification; D012763:Shigella flexneri / Q000737:chemistry / Q000302:isolation & purification; D013059:Spectrum Analysis, Raman / Q000379:methods*