title: Red chlorophylls in the exciton model of photosystem I.
abstract: Structural arrangement of pigment molecules of Photosystem I of photosynthetic cyanobacterium Synechococcus elongatus is used for theoretical modeling of the excitation energy spectrum. It is demonstrated that a straightforward application of the exciton theory with the assumption of the same molecular transition energy does not describe the red side of the absorption spectrum. Since the inhomogeneity in the molecular transition energies caused by a dispersive interaction with the molecular surrounding cannot be identified directly from the structural model, the evolutionary search procedure is used for fitting the low temperature absorption and circular dichroism spectra. As a result, one dimer, three trimers and one tetramer of chlorophyll molecules responsible for the red side of the absorption spectrum with their assignment to the spectroscopically established three bands at 708, 714 and 719 nm are determined. All of them are found to be situated not in the very close vicinity of the reaction center but are encircling it almost at the same distance. In order to explain the unusual broadening on the red side of the spectrum the exciton state mixing with the charge transfer (CT) states is considered. It is shown that two effects can be distinguished as caused by mixing of those states: (i) the oscillator strength borrowing by the CT state from the exciton transition and (ii) the borrowing of the high density of the CT state by the exciton state. The intermolecular vibrations between two counter-charged molecules determine the high density in the CT state. From the broad red absorption wing it is concluded that the CT state should be the lowest state in the complexes under consideration. Such mixing effect enables resolving the diversity in the molecular transition energies as determined by different theoretical approaches.
authors.affiliation: Institute of Physics, Savanoriu Ave. 231, 02300 Vilnius, Lithuania. sarunas@ar.fi.lt
authors.forename: Sarunas
authors.initials: S
authors.lastname: Vaitekonis
authors.forename: Gediminas
authors.initials: G
authors.lastname: Trinkunas
authors.forename: Leonas
authors.initials: L
authors.lastname: Valkunas
mesh_terms: D002734:Chlorophyll / Q000737:chemistry* / Q000235:genetics; D002942:Circular Dichroism; D003116:Color; D019143:Evolution, Molecular; D008956:Models, Chemical; D045331:Photosystem I Protein Complex / Q000737:chemistry* / Q000235:genetics; D013057:Spectrum Analysis; D046940:Synechococcus / Q000737:chemistry* / Q000235:genetics; D014732:Vibration
chemical_list: D045331:Photosystem I Protein Complex; D002734:Chlorophyll