OxfordGrid: a web interface for pairwise comparative map views.
CONCLUSIONS
OxfordGrid is a web application and database schema for storing and interactively displaying genetic map data in a comparative, dot-plot, fashion. Its display is composed of a matrix of cells, each representing a pairwise comparison of mapped probe data for two linkage groups or chromosomes. These are arranged along the axes with one forming grid columns and the other grid rows with the degree and pattern of synteny/colinearity between the two linkage groups manifested in the cell's dot density and structure. A mouse click over the selected grid cell launches an image map-based display for the selected cell. Both individual and linear groups of mapped probes can be selected and displayed. Also, configurable links can be used to access other web resources for mapped probe information.


BACKGROUND
OxfordGrid is implemented in C#/ASP.NET and the package, including MySQL schema creation scripts, is available at ftp://cggc.agtec.uga.edu/OxfordGrid/.
Yang
Hongyu
H
Center for Applied Genetic Technologies, University of Georgia 111 Riverbend Road, Athens, GA 30602, USA.
Gingle
Alan R
AR
D000465:Algorithms; D002874:Chromosome Mapping / Q000379:methods*; D019295:Computational Biology / Q000379:methods*; D003627:Data Interpretation, Statistical; D003628:Database Management Systems; D030541:Databases, Genetic; D008040:Genetic Linkage; D016247:Information Storage and Retrieval; D020407:Internet; D012984:Software; D014584:User-Computer Interface