title: Haplotype diversity and somatic instability in normal and expanded SCA8 alleles.
abstract: Spinocerebellar ataxia type 8 (SCA8) is an autosomal dominant late-onset neurodegenerative disorder, belonging to the group of diseases caused by trinucleotide repeat expansions. SCA8 remains one of the most intriguing SCAs, regarding the reduced disease penetrance, and the high instability and poorly understood functional meaning of the (CTA)(n)(CTG)(n) expansion. We performed haplotype and sequencing analysis in a large region, encompassing the repeat, in four SCA8 and 20 control Portuguese families. The results from the haplotype study including the combined repeat and six SNP markers showed two different haplotypes, AG-Exp-GTTG and AG-Exp-CTTG, in the SCA8 families. Among the control population, these were also the most frequent, in a total of five haplotypes found unequally distributed throughout repeat sizes. From cloning fragments of control, unstable normal and expanded chromosomes, eleven different base substitutions were identified in exon A of the SCA8 gene. In some instances, somatic variability in repeat size or base composition was found for a same chromosome, regardless of its normal or expanded nature. In conclusion, our results in Portuguese families with ataxia show that SCA8 expansions arose in common backgrounds; in addition, this region seems to be unstable beyond the repeat.
authors.affiliation: UnIGENe, IBMC, Universidade do Porto, Portugal.
authors.forename: Sandra
authors.initials: S
authors.lastname: Martins
authors.forename: Ana I
authors.initials: AI
authors.lastname: Seixas
authors.forename: Paula
authors.initials: P
authors.lastname: Magalhães
authors.forename: Paula
authors.initials: P
authors.lastname: Coutinho
authors.forename: Jorge
authors.initials: J
authors.lastname: Sequeiros
authors.forename: Isabel
authors.initials: I
authors.lastname: Silveira
mesh_terms: D000483:Alleles; D005260:Female; D042822:Genomic Instability; D006239:Haplotypes; D006801:Humans; D008297:Male; D009419:Nerve Tissue Proteins / Q000235:genetics* / Q000378:metabolism*; D010375:Pedigree; D020641:Polymorphism, Single Nucleotide; D011174:Portugal; D062085:RNA, Long Noncoding; D022661:RNA, Untranslated; D019680:Trinucleotide Repeat Expansion / Q000235:genetics*; D018911:Trinucleotide Repeats
chemical_list: C415906:ATXN8OS gene product, human; D009419:Nerve Tissue Proteins; D062085:RNA, Long Noncoding; D022661:RNA, Untranslated